Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_C01
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1245 - 32036929-32037042,32037152-32037208,32037299-320373...    28   5.6  
11_01_0196 - 1547373-1549859                                           27   9.7  

>04_04_1245 -
           32036929-32037042,32037152-32037208,32037299-32037375,
           32037479-32037563,32037615-32037684,32038007-32038068,
           32038249-32038336,32038685-32038815,32039182-32039213,
           32039377-32039489,32039741-32040045,32040148-32040233,
           32040350-32040425,32041002-32041097
          Length = 463

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 154 CCLCRRFFGAMFFQIIARRRSAKLANASHCTIALNC 261
           C  C RF G++ FQI  R     + ++S CT   +C
Sbjct: 92  CSYCFRFIGSIEFQIGRRLYWQSVGSSSDCTNRRHC 127


>11_01_0196 - 1547373-1549859
          Length = 828

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 147 KVLLLVSSLFWSYVLSDHCTTPLGE-ASECVSLYDC 251
           K++ L  S FW Y L+D    PLG+ A++C+    C
Sbjct: 345 KLVALPHSDFWGYDLNDGEVMPLGDCANKCLDNCAC 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,392
Number of Sequences: 37544
Number of extensions: 325567
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)