Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B24
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   139   1e-33
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   138   2e-33
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   132   1e-31
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    28   4.8  
At5g36210.1 68418.m04365 expressed protein                             27   6.4  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   8.4  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    27   8.4  

>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  139 bits (336), Expect = 1e-33
 Identities = 77/158 (48%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
 Frame = +1

Query: 46  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 225
           M++ + NR  I +YLFKEGV  AKKD++ PKH  L  +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHP-LIDVPNLQVIKLMQSFKSKEYVRETF 59

Query: 226 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 399
           AW H+YW+LTN GIE+LR +L+LP ++VPATLK+S +       GP G R   P RS  D
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119

Query: 400 RSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 510
           R  +  R     G    D+K    P      F+GG GR
Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  138 bits (335), Expect = 2e-33
 Identities = 76/163 (46%), Positives = 99/163 (60%), Gaps = 6/163 (3%)
 Frame = +1

Query: 46  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 225
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +  +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 226 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 390
           AW H+YW+LTN GI++LR +L+LP EIVPATLK+  +      G  G RP  P R     
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120

Query: 391 -AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGR 516
              DR  YR  P + G   +  KA   P      F+GG G  R
Sbjct: 121 RFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGGAGGAR 160


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  132 bits (320), Expect = 1e-31
 Identities = 77/167 (46%), Positives = 98/167 (58%), Gaps = 11/167 (6%)
 Frame = +1

Query: 46  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELXKIPNLQVIKAMQSLKSRGYVKEQF 225
           M++ + NR  I +YLFKEGV  AKKD++  KH  L  +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHP-LIDVPNLQVIKLMQSFKSKEYVRETF 59

Query: 226 AWRHFYWYLTNXGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 393
           AW H+YW+LTN GIE+LR +L+LP ++VPATLK+S +       GP G R   P      
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119

Query: 394 ----EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 513
                DR  YR  P A G    +K     P      F+G   G+GRG
Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 484 LEFKGGYGRGRPAS*FKQ*KNLK 552
           L+F+GGY  G   S FK  KNLK
Sbjct: 178 LDFRGGYFEGSVPSSFKNLKNLK 200


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 43  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 141
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 138 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 52
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 133 PKHTELXKIPNLQVIKAMQSLKSRGYVKEQ 222
           P HT +  IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,317
Number of Sequences: 28952
Number of extensions: 197620
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)