Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.77 
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    28   1.3  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    27   3.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.4  

>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 491 RVQHDSVGVPXFQELVQVGVDGRFL 417
           RVQ D++ +  ++EL+  G +G+FL
Sbjct: 111 RVQSDTIALQFYEELIAEGFEGKFL 135


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 590 LRSQHLNGPLVYVNPVWLFIGPGLRYGTAAATPRVQHDSVGVPXF 456
           LR+ H NG   +   ++L IG GL YG +   PR    ++GV  F
Sbjct: 78  LRAFHANGASFFFIFLYLHIGRGLYYG-SYKYPRTMTWNIGVIIF 121


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 184 QINCDFCQFCRNNL*CKECMVL 119
           Q  C+ C F  +N  CK CM+L
Sbjct: 284 QTTCERCGFISSNRICKACMLL 305


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = -2

Query: 288 PTHLRCSEHPITTLFHXXXXXXXXXXXXXXXQSTHR*TVIFVNSVVII 145
           PT    S HPITT F+                + H  T +F  SV I+
Sbjct: 159 PTTTESSIHPITTGFYNTTFTTGYFNTSVTSVAVHNSTTVFPTSVPIV 206


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   DSIYLLNSVFTSFVKKLS 55
           D+I+LL S+F SFV K S
Sbjct: 435 DAIFLLLSIFDSFVNKFS 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,527
Number of Sequences: 5004
Number of extensions: 49231
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)