Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B21
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     87   9e-18
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    29   4.3  
SB_28484| Best HMM Match : Zona_pellucida (HMM E-Value=4.3e-06)        28   5.7  
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)                    28   5.7  
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_8485| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                  28   7.6  
SB_54852| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 28   7.6  
SB_34744| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 28   7.6  
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)                    28   7.6  

>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 37/67 (55%), Positives = 50/67 (74%)
 Frame = +3

Query: 447 ELLEXGNAHAVMLYTWRCCSRAIPQPRSNEQPDRVHIYERTVQVLAPEVDKLLQFMYFQR 626
           ELLE G  +AV+LYTWR CSRA+P  +S++QP+RV IYE+TV+VL PE++KL  FM+F  
Sbjct: 25  ELLEEGEKYAVVLYTWRSCSRAVPSVKSDDQPNRVEIYEKTVEVLEPEINKLKGFMHFAM 84

Query: 627 KXIXGLC 647
             +   C
Sbjct: 85  TVVTRFC 91


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +3

Query: 420 EATVHANLNELLEXGNAHAVMLYTWRCCSRAIPQPRSNEQPDRVHIYERTVQVLAPEVD 596
           E  +  N N L    N + ++  T   C   I   RS  +P+R H+++++ +V   ++D
Sbjct: 32  ERLIVENTNSLNSRINKYFIINLTTGRCFAYITNRRSRCRPNRFHVHKQSAKVNVGKID 90


>SB_28484| Best HMM Match : Zona_pellucida (HMM E-Value=4.3e-06)
          Length = 199

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 550 TRSGCSLDLG*GMARLQQR-HVYSMTAWAFPXSRSSFKLAWTVASXMYFAIPVMNPLRSS 374
           T+    L++  G      R  +Y  + ++ P   SSF L+ TV + +YF + V  P +S 
Sbjct: 113 TKKKLDLNIRDGAGEFSLRMDLYKDSTYSDPIKPSSFPLSVTVNARLYFQLLVDTPDKSL 172

Query: 373 KLVS 362
            +++
Sbjct: 173 SIIA 176


>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
          Length = 189

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 395 HRYRKVHXGSDRPRQL-ERAPGXRERPRCHAVHVALLQPCHTSAQVQ*TTRPGSHIREDR 571
           HR + ++   DR R L    PG ++  +   VH+A L   H +  +Q T +P S    D 
Sbjct: 73  HRVQVLNAYIDRLRHLIPLFPGEKKPSKTETVHLAALYIEHMTEIIQNTEKPPS--VSDA 130

Query: 572 SSAGS 586
           SS G+
Sbjct: 131 SSPGT 135


>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 495 RCCSRAIPQPRSNEQ 539
           RCC+R +PQP++++Q
Sbjct: 154 RCCTRKLPQPQAHQQ 168


>SB_8485| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 257

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 495 RCCSRAIPQPRSNEQ 539
           RCC+R +PQP++++Q
Sbjct: 241 RCCTRKLPQPQAHQQ 255


>SB_54852| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 296

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 495 RCCSRAIPQPRSNEQ 539
           RCC+R +PQP++++Q
Sbjct: 241 RCCTRKLPQPQAHQQ 255


>SB_34744| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 296

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 495 RCCSRAIPQPRSNEQ 539
           RCC+R +PQP++++Q
Sbjct: 241 RCCTRKLPQPQAHQQ 255


>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
          Length = 1358

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 495 RCCSRAIPQPRSNEQ 539
           RCC+R +PQP++++Q
Sbjct: 345 RCCTRKLPQPQAHQQ 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,741
Number of Sequences: 59808
Number of extensions: 385202
Number of successful extensions: 915
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)