Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B21
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.5  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 492 WRCCSRAIPQPRSNE 536
           WR C R++PQ   N+
Sbjct: 28  WRICDRSLPQKEYNQ 42


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  SRNYHFNFNDKQRGFCTNVQE 104
           S NY++N N+ ++ +C N ++
Sbjct: 86  SNNYNYNNNNYKKLYCNNYKK 106


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  SRNYHFNFNDKQRGFCTNVQE 104
           S NY++N N+ ++ +C N ++
Sbjct: 86  SNNYNYNNNNYKKLYCNNYKK 106


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  SRNYHFNFNDKQRGFCTNVQE 104
           S NY++N N+ ++ +C N ++
Sbjct: 86  SNNYNYNNNNYKKLYCNNYRK 106


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 25  SIYIVRQEIITLILTTNNEDFALMYKNEQ*LIIPYILCIINY 150
           S+ ++  E+    L  N  D A++ KNE+  I+  I C + +
Sbjct: 130 SLSLITMELCGTTLQ-NRLDEAILIKNERICILKSITCALQF 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,733
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)