BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B19
(540 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A1RXC6 Cluster: Heat shock protein Hsp20; n=1; Thermofi... 39 0.064
UniRef50_Q97W19 Cluster: Small heat shock protein hsp20 family; ... 38 0.15
UniRef50_Q3SB84 Cluster: Molecular chaperone; n=1; uncultured eu... 38 0.20
UniRef50_A7Q349 Cluster: Chromosome chr12 scaffold_47, whole gen... 36 0.45
UniRef50_A7K7F4 Cluster: Hsp20; n=4; Bifidobacterium|Rep: Hsp20 ... 36 0.79
UniRef50_A6NZ93 Cluster: Putative uncharacterized protein; n=1; ... 36 0.79
UniRef50_A5N123 Cluster: Putative uncharacterized protein; n=1; ... 36 0.79
UniRef50_A1SV28 Cluster: Heat shock protein Hsp20; n=2; Psychrom... 36 0.79
UniRef50_O75168 Cluster: TEL2 homolog; n=13; Tetrapoda|Rep: TEL2... 35 1.0
UniRef50_A2EJL4 Cluster: Hsp20/alpha crystallin family protein; ... 35 1.4
UniRef50_A0E9R7 Cluster: Chromosome undetermined scaffold_85, wh... 34 2.4
UniRef50_A6DE36 Cluster: Heat shock protein Hsp20; n=1; Caminiba... 33 3.2
UniRef50_A6Q780 Cluster: Heat shock protein Hsp20; n=2; Epsilonp... 33 4.2
UniRef50_Q385M5 Cluster: DNA repair and recombination protein RA... 33 4.2
UniRef50_Q23241 Cluster: Putative uncharacterized protein; n=2; ... 33 4.2
UniRef50_A2DZ61 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_Q5UZZ7 Cluster: Small heat shock protein; n=1; Haloarcu... 33 5.6
UniRef50_Q8GH69 Cluster: MtsA; n=1; Lactobacillus plantarum|Rep:... 32 7.3
UniRef50_Q81QZ9 Cluster: Heat shock protein, Hsp20 family; n=8; ... 32 7.3
UniRef50_A6Q5H5 Cluster: Heat shock protein Hsp20; n=1; Nitratir... 32 7.3
UniRef50_Q6EEU4 Cluster: Syntaxin 5-like protein; n=3; Entamoeba... 32 7.3
UniRef50_A0D6K8 Cluster: Chromosome undetermined scaffold_4, who... 32 7.3
UniRef50_Q31E11 Cluster: Hsp20/alpha crystallin family protein; ... 32 9.7
UniRef50_Q8S1A6 Cluster: Putative uncharacterized protein B1114B... 32 9.7
UniRef50_A0B7C0 Cluster: Heat shock protein Hsp20; n=1; Methanos... 32 9.7
>UniRef50_A1RXC6 Cluster: Heat shock protein Hsp20; n=1; Thermofilum
pendens Hrk 5|Rep: Heat shock protein Hsp20 -
Thermofilum pendens (strain Hrk 5)
Length = 171
Score = 39.1 bits (87), Expect = 0.064
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Frame = +2
Query: 59 GGLGRATVLPWLVTLAVSPLRPPSAPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKF 238
G GR + P+ +V + P P VRE W N+ + ++KE F
Sbjct: 35 GEKGRRIIGPYYYGFSVE-IGPDGVPKVRE--------WGNI--RPGPIKPVVKESIEPF 83
Query: 239 PXIINEGRVEGDKYXISIHLPGYXQKDINVKAKNGVLMVQANSAFNHYLKIQ-NLPWDVN 415
+ +EG D Y + + +PG + +INV+A L+V +Y +++ + P D +
Sbjct: 84 TDVFDEG----DHYRVILDIPGVEKDEINVEATENSLVVSTTGERKYYKEVRFSDPVDPS 139
Query: 416 SEXSWVYXKDVLKITFPLKQKQPED 490
+ + Y VL +T K+K ++
Sbjct: 140 TAKA-QYKNGVLTVTIEKKEKPKKE 163
>UniRef50_Q97W19 Cluster: Small heat shock protein hsp20 family;
n=8; Archaea|Rep: Small heat shock protein hsp20 family
- Sulfolobus solfataricus
Length = 176
Score = 37.9 bits (84), Expect = 0.15
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +2
Query: 266 EGDKYXISIHLPGYXQKDINVKAKNG--VLMVQANSAFNHYLKIQNLPWDVNSEXSWVYX 439
+GD+ + +PG ++DI VK NG L++ A S Y K +LP +V+ + +
Sbjct: 92 KGDEIKVVAEVPGVNKEDIKVKVTNGGKKLVITAKSEDRQYYKEIDLPAEVDEKAAKANF 151
Query: 440 KD-VLKITFPLK 472
K+ VL+IT K
Sbjct: 152 KNGVLEITLKKK 163
>UniRef50_Q3SB84 Cluster: Molecular chaperone; n=1; uncultured
euryarchaeote Alv-FOS5|Rep: Molecular chaperone -
uncultured euryarchaeote Alv-FOS5
Length = 167
Score = 37.5 bits (83), Expect = 0.20
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +2
Query: 269 GDKYXISIHLPGYXQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEXSWVYXKDV 448
GD+ + LPG +K+I+VK G L + F+ +K++N D S SW + V
Sbjct: 99 GDEVSVIAELPGVDEKEIDVKCDRGKLKINVPGKFHKEVKMRN--GDPKS-LSWRFKNGV 155
Query: 449 LKITFPLKQ 475
L++ K+
Sbjct: 156 LEVNIKRKK 164
>UniRef50_A7Q349 Cluster: Chromosome chr12 scaffold_47, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr12 scaffold_47, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 403
Score = 36.3 bits (80), Expect = 0.45
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +2
Query: 152 MLDTHSLWSNLANEMQHLDNMMKELSLKFPXIINEGRVEGDKYXISIHLPGYXQKDINVK 331
+L+ H L S+LA D+ ++ P I+NE ++ KY I +
Sbjct: 193 VLEVHVLRSSLAANSAGQDSEFHKIEFPDPKIVNENQMMVSKY-FEIQCAEGDLQSSESG 251
Query: 332 AKNGVLMVQANSAFNHYLKIQNLPWDVNSEXS 427
+ GVL + AF LK + PW V+++ S
Sbjct: 252 SDTGVLSTDYDDAF-EVLKSETTPWSVSTDGS 282
>UniRef50_A7K7F4 Cluster: Hsp20; n=4; Bifidobacterium|Rep: Hsp20 -
Bifidobacterium breve
Length = 167
Score = 35.5 bits (78), Expect = 0.79
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 266 EGDK-YXISIHLPGYXQKDINVKAKNGVLMVQANSAFNH 379
E DK Y + I +PG+ + DIN++ NG L V A+ + H
Sbjct: 47 ETDKGYDVDIDMPGFKKDDINLELNNGYLTVSASRSSEH 85
>UniRef50_A6NZ93 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 142
Score = 35.5 bits (78), Expect = 0.79
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 209 NMMKELSLKFPXIINEGRVEGDKYXISIHLPGYXQKDINVKAKNGVLMVQA 361
+ + + P + R DKY + LPG+ ++DI++ K+G+L + A
Sbjct: 24 DFFRSSNTSLPAFRTDIREVNDKYVLEAELPGFNKEDISLDVKDGILTITA 74
>UniRef50_A5N123 Cluster: Putative uncharacterized protein; n=1;
Clostridium kluyveri DSM 555|Rep: Putative
uncharacterized protein - Clostridium kluyveri DSM 555
Length = 130
Score = 35.5 bits (78), Expect = 0.79
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 266 EGDKYXISIHLPGYXQKDINVKAKNGVLMVQANSAFNHYLK 388
EGDK I + LPG ++++N++ L++ A + HY K
Sbjct: 62 EGDKIIIVVELPGIEEENVNLEIDGNDLIITAEGSEKHYYK 102
>UniRef50_A1SV28 Cluster: Heat shock protein Hsp20; n=2;
Psychromonas ingrahamii 37|Rep: Heat shock protein Hsp20
- Psychromonas ingrahamii (strain 37)
Length = 140
Score = 35.5 bits (78), Expect = 0.79
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 272 DKYXISIHLPGYXQKDINVKAKNGVLMVQANSAFNHYLKIQNL 400
DK+ LPG +KDINV+ +NG+L ++A + ++ N+
Sbjct: 44 DKFIFVAELPGVEKKDINVQLQNGLLTIEAKMYEDKESEVDNV 86
>UniRef50_O75168 Cluster: TEL2 homolog; n=13; Tetrapoda|Rep: TEL2
homolog - Homo sapiens (Human)
Length = 844
Score = 35.1 bits (77), Expect = 1.0
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Frame = +1
Query: 106 RITITTPFSSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVEVPXHYKRR--TRGRRQV 279
R+ + +L S + GH F ++ +R LG+ + A+ + + R +
Sbjct: 16 RLAVREAIHALSSSEDGGHIFCTLESLKRY--LGEMEPPALPREKEEFASAHFSPVLRCL 73
Query: 280 SXIYSPAWLXTERHQRESEKWSA---DGAG*QCF*SLLENTEPSLGCEFR 420
+ SPAWL H R E W++ +G Q F L+E E + G FR
Sbjct: 74 ASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFR 123
>UniRef50_A2EJL4 Cluster: Hsp20/alpha crystallin family protein;
n=2; Trichomonas vaginalis G3|Rep: Hsp20/alpha
crystallin family protein - Trichomonas vaginalis G3
Length = 110
Score = 34.7 bits (76), Expect = 1.4
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 278 YXISIHLPGYXQKDINVKAKNGVLMVQA--NSAFNHYLKIQNLPWDVNSEXSWVYXK--D 445
Y I+I LPG +KD+N+ ++ V+A Y KI + + E SW K D
Sbjct: 21 YLINIELPGIAKKDVNIDISENIISVKAEKKGPCKDYTKIDSGRVYGSIESSWKVPKDGD 80
Query: 446 VLKITFPLKQ 475
KIT L +
Sbjct: 81 AEKITAALNE 90
>UniRef50_A0E9R7 Cluster: Chromosome undetermined scaffold_85, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_85, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 2975
Score = 33.9 bits (74), Expect = 2.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 170 LWSNLANEMQHLDNMMKELSLKFPXIINE 256
LW+NL N+ LD + +L+ KFP ++N+
Sbjct: 2867 LWANLENQQAALDKLRDKLNAKFPNLVNK 2895
>UniRef50_A6DE36 Cluster: Heat shock protein Hsp20; n=1;
Caminibacter mediatlanticus TB-2|Rep: Heat shock protein
Hsp20 - Caminibacter mediatlanticus TB-2
Length = 142
Score = 33.5 bits (73), Expect = 3.2
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Frame = +2
Query: 236 FPXIINEGRVEGDKYXISIHLPGYXQKDINVKAKNGVLMV----------------QANS 367
F +NE RV+ Y + I LPG ++DI++ +GVL++ + S
Sbjct: 37 FTPAVNE-RVDEKGYYLEIDLPGVKKEDIDISVNDGVLVISGERKLEKKEEKPNYTRIES 95
Query: 368 AFNHYLKIQNLPWDVN-SEXSWVYXKDVLKITFPLKQK 478
F + + LP D + Y VLK+ P KQK
Sbjct: 96 FFGRFERAFKLPADADLDNIEAKYEDGVLKVFIPKKQK 133
>UniRef50_A6Q780 Cluster: Heat shock protein Hsp20; n=2;
Epsilonproteobacteria|Rep: Heat shock protein Hsp20 -
Sulfurovum sp. (strain NBC37-1)
Length = 141
Score = 33.1 bits (72), Expect = 4.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 251 NEGRVEGDKYXISIHLPGYXQKDINVKAKNGVLMVQANSAFNHYLK 388
N + D + I I LPG +KDI +K ++ +L V+A + +K
Sbjct: 40 NLAKKGSDTFRIEIDLPGVDKKDIELKVEDNILTVKATRKMKNEVK 85
>UniRef50_Q385M5 Cluster: DNA repair and recombination protein
RAD54, putative; n=1; Trypanosoma brucei|Rep: DNA repair
and recombination protein RAD54, putative - Trypanosoma
brucei
Length = 1037
Score = 33.1 bits (72), Expect = 4.2
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 217 EGAVVEVPXHYKRRTRGRRQVSXIYSPAWLXTER-HQRESEKWSAD 351
EGAVV HYKR GR QVS + P R HQR K+ D
Sbjct: 332 EGAVVLFHAHYKRDVNGRLQVSVVVDPIIGDKLRPHQRIGVKFLFD 377
>UniRef50_Q23241 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 178
Score = 33.1 bits (72), Expect = 4.2
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 36 LVLCGLLAAVSAAPQYYHGSSHWPYHHYDP 125
L LC LLA SA YY S + PY++Y P
Sbjct: 5 LALCSLLAVASAQYLYYPTSYYTPYYYYYP 34
>UniRef50_A2DZ61 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 522
Score = 32.7 bits (71), Expect = 5.6
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +2
Query: 197 QHLDNMMKELSLKFPXIINEGRVEGDKY-----XISIHLPGYXQKDINVKAKNGVLMVQA 361
+ L N KE+ K I NE R DK + +HL QKD ++ + +A
Sbjct: 308 EQLQNKEKEIENKLNTINNEIREVKDKNNKLETSVRMHLSTIEQKDASISQLKSSISSKA 367
Query: 362 NSAFNHYLKIQNLPWDVN 415
N KIQ + ++N
Sbjct: 368 TEITNQQYKIQKMTTEIN 385
>UniRef50_Q5UZZ7 Cluster: Small heat shock protein; n=1; Haloarcula
marismortui|Rep: Small heat shock protein - Haloarcula
marismortui (Halobacterium marismortui)
Length = 240
Score = 32.7 bits (71), Expect = 5.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 272 DKYXISIHLPGYXQKDINVKAKNGVLMVQANS 367
D Y + + LPG+ + D+ V+ ++GVL +Q S
Sbjct: 149 DGYAVMVDLPGFERDDLAVRFEDGVLSIQGES 180
>UniRef50_Q8GH69 Cluster: MtsA; n=1; Lactobacillus plantarum|Rep:
MtsA - Lactobacillus plantarum
Length = 313
Score = 32.3 bits (70), Expect = 7.3
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +2
Query: 158 DTHSLWSNLANEMQHLDNMMKELSLKFPXIINEGRVEGDKYXISI-HLPGYXQKDINVKA 334
D H+ W +LAN +Q++ N+ + L K P + D+Y + L Q
Sbjct: 140 DPHA-WLDLANGIQYVKNINRTLQAKDPKHAAVYQKNTDRYVAKLTKLHESAQTKFKQIP 198
Query: 335 KNGVLMVQANSAFNHYLKIQNLP----WDVNSE 421
+ L+V + AF ++ ++P W+VN+E
Sbjct: 199 TSQRLLVTSEGAFKYFSAAYHVPAAYIWEVNTE 231
>UniRef50_Q81QZ9 Cluster: Heat shock protein, Hsp20 family; n=8;
Bacillus cereus group|Rep: Heat shock protein, Hsp20
family - Bacillus anthracis
Length = 145
Score = 32.3 bits (70), Expect = 7.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 266 EGDKYXISIHLPGYXQKDINVKAKNGVLMVQANS 367
+ DKY + LPG+ +++I V+ + VL +QA +
Sbjct: 46 QSDKYTVKADLPGFQKENIQVEFEQDVLTIQATN 79
>UniRef50_A6Q5H5 Cluster: Heat shock protein Hsp20; n=1;
Nitratiruptor sp. SB155-2|Rep: Heat shock protein Hsp20
- Nitratiruptor sp. (strain SB155-2)
Length = 145
Score = 32.3 bits (70), Expect = 7.3
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 266 EGDK-YXISIHLPGYXQKDINVKAKNGVLMVQANSAF 373
E DK Y + + LPG ++DINV+ K+ +L++ F
Sbjct: 47 EDDKAYYVEVDLPGVKKEDINVEVKDNLLVLSGERKF 83
>UniRef50_Q6EEU4 Cluster: Syntaxin 5-like protein; n=3; Entamoeba
histolytica|Rep: Syntaxin 5-like protein - Entamoeba
histolytica
Length = 292
Score = 32.3 bits (70), Expect = 7.3
Identities = 26/122 (21%), Positives = 53/122 (43%)
Frame = +2
Query: 128 SAPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPXIINEGRVEGDKYXISIHLPGY 307
+AP ++ + H+ + EM+ ++ + KE+ K+ G+ E + + HL Y
Sbjct: 77 TAPQIQRLTNEIHTNLQEINKEMKQIEEIRKEIEKKYGI---TGQNENHREIVCKHL-NY 132
Query: 308 XQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEXSWVYXKDVLKITFPLKQKQPE 487
K+ K+ VL ++A S K +S + +Y +++ + +F P
Sbjct: 133 LVKN-TTKSFTDVLQIRAESIKEQEKKKHKYSTQQSSTPNQIYQRNLNQFSFNEDDSIPP 191
Query: 488 DS 493
DS
Sbjct: 192 DS 193
>UniRef50_A0D6K8 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_4,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 533
Score = 32.3 bits (70), Expect = 7.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 137 YVRESMLDTHSLWSNLANEMQHLDNMMKELSLKF 238
Y+ E ++ H LW NEM+H+ N +K L K+
Sbjct: 298 YLDEKTVN-HPLWKEFNNEMEHIKNQLKWLEFKY 330
>UniRef50_Q31E11 Cluster: Hsp20/alpha crystallin family protein;
n=2; Proteobacteria|Rep: Hsp20/alpha crystallin family
protein - Thiomicrospira crunogena (strain XCL-2)
Length = 141
Score = 31.9 bits (69), Expect = 9.7
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 182 LANEMQHLDNMMKELSLK-FPXIINEGRVEGD-KYXISIHLPGYXQKDINVKAKNGVLMV 355
L N + HL +E ++ F +N EGD Y I I LPG ++DI+V+ K LM+
Sbjct: 17 LENRLHHLFPKGEESNVAAFTPTVNTR--EGDYAYHIEIDLPGVKKEDIHVEVKENRLMI 74
Query: 356 QANSAFNHYLK 388
+K
Sbjct: 75 SGERKVKEEVK 85
>UniRef50_Q8S1A6 Cluster: Putative uncharacterized protein
B1114B07.29; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
B1114B07.29 - Oryza sativa subsp. japonica (Rice)
Length = 629
Score = 31.9 bits (69), Expect = 9.7
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 14 TLHENDRLSVVRTAG--GGLGRATVLPWLVTLAVSPLRPPSAPYVR-ESMLDTHSL 172
TL E+DRL R A GG GR T +V + V PP PY R E + + H L
Sbjct: 67 TLAEDDRLRPQRGASLVGGGGRVTACVLVVIVIVVVPPPPRRPYPRPEPLREAHVL 122
>UniRef50_A0B7C0 Cluster: Heat shock protein Hsp20; n=1;
Methanosaeta thermophila PT|Rep: Heat shock protein
Hsp20 - Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 195
Score = 31.9 bits (69), Expect = 9.7
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 EGDKYXISIHLPGYXQKDINVKAKNGVLMVQANSAFNHYLKIQ-NLPWDVNSEXSWVYXK 442
E D Y I + LPG + +I + + ++ + Y IQ P D +S + +Y
Sbjct: 116 EKDSYKIFVELPGVDKSNIKLDVAEDSVEIRTDDEKKFYKMIQLERPVDPDSAKA-IYNN 174
Query: 443 DVLKITFPLKQKQ 481
VL +T K+K+
Sbjct: 175 GVLTLTLEKKEKR 187
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,788,957
Number of Sequences: 1657284
Number of extensions: 9350844
Number of successful extensions: 29119
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 28263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29107
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -