Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B19
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   3.1  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   3.1  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   5.4  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.2  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   9.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   9.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   9.5  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 39  VLCGLLAAVSAAPQYYHGSSHWPYHHYDPLQLLTFGKACWTHIR--FGPTLPTK 194
           ++ GL AA  AA    HG +    +    L ++ FG+AC  HI+    P  P K
Sbjct: 425 IVPGLYAAGEAACVSVHGGNRLGANSL--LDIVVFGRACALHIKDTLEPNTPHK 476


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 146 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPXIINEGRV 265
           E   + + +W+++  +MQ  D   ++L   F  I N G++
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKL 143


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 83  LPWLVTLAVSPLRPPSAPYVRESMLDTHSLWSNLAN-EMQHLDNMMKELSL 232
           LPWL+T      +  + P   + M+    LW    N  ++ LD  +++ SL
Sbjct: 160 LPWLITPPSEEEQKLAIPITSQQMVRLEELWRKDPNANLEDLDKPIEDDSL 210


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 191  EMQHLDNMMKELSLKFPXIINEGRV 265
            E+++L NM+ EL  KFP +   GR+
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 57  AAVSAAPQYYHGSSHWPYHHYDPLQLL 137
           A  +A PQYY     +P  HY P Q L
Sbjct: 502 ATDAAKPQYYIPKDPYPVPHYYPQQPL 528


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 286 IYSPAWLXTERHQRESEKW 342
           ++ P WL   +H + +EKW
Sbjct: 343 LFLPRWLPCIKHNQHNEKW 361


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 143 ERKELKGVVMVIRPM*RAMVVLWRGRDR 60
           E  +++GV+ +  P   A   +WRG DR
Sbjct: 466 EGNDVEGVLAIRSPWPSAARTVWRGHDR 493


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 148 KHVGHTFALVQPCQRNATLGQHDEG 222
           KH G +  L QP Q+NA   +  +G
Sbjct: 709 KHEGRSETLAQPGQQNANQSEEKQG 733


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 323 NVKAKNGVLMVQANSAF 373
           NVKA+  VLM Q  SAF
Sbjct: 608 NVKAERAVLMAQEESAF 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,692
Number of Sequences: 5004
Number of extensions: 37553
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)