Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B19
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)             28   4.2  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_54390| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_15317| Best HMM Match : Pox_A32 (HMM E-Value=0.013)                 27   9.8  
SB_1051| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)
          Length = 489

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 103 GRITITTPFSSLRSGKHVGHTFALVQPC 186
           G+   T P+  +    H+GHTF L + C
Sbjct: 184 GKFFCTFPYPYMNGKLHLGHTFTLAKAC 211


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 140  VRESMLDTHSLWSNLANEMQHLDNMMKELSL 232
            + ES L+TH +  NLA E+  LDN   E++L
Sbjct: 4396 IAESQLETHDVL-NLAYEITELDNSPPEIAL 4425


>SB_54390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 39  VLCGLLAAVSAAPQYYHGSSHWPYHHYDPLQLLTFGK 149
           ++  LL+ + AA + Y G   + +HH D L  +  G+
Sbjct: 83  IVTSLLSVIEAALRSYSGIPPFDFHHLDRLCRIVMGR 119


>SB_15317| Best HMM Match : Pox_A32 (HMM E-Value=0.013)
          Length = 1124

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/73 (23%), Positives = 29/73 (39%)
 Frame = +1

Query: 133  SLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVEVPXHYKRRTRGRRQVSXIYSPAWLXT 312
            S ++ +H G T            +   D+ A  +   H++RR+  R +       A    
Sbjct: 963  SKQTFRHEGPTHIRTSVYHTRVRIYNVDDAAEQDFKDHHQRRSHNRPRRRYRLGWAQAEK 1022

Query: 313  ERHQRESEKWSAD 351
            ERH +  EK+  D
Sbjct: 1023 ERHDKALEKYQQD 1035


>SB_1051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 187 GKVGPKRMCVQHAFPNV 137
           GK GP+ +C+ + +PNV
Sbjct: 80  GKFGPEELCLSNVYPNV 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,886,536
Number of Sequences: 59808
Number of extensions: 296282
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)