Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B19
         (540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32640.1 68417.m04646 sec23/sec24 transport protein-related         31   0.49 
At1g22060.1 68414.m02759 expressed protein                             31   0.65 
At5g61620.1 68418.m07732 myb family transcription factor contain...    29   2.0  
At5g57230.1 68418.m07150 expressed protein                             28   4.6  
At3g18370.1 68416.m02336 C2 domain-containing protein contains P...    28   4.6  
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    27   6.1  
At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar...    27   8.0  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    27   8.0  

>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
          Length = 1069

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 59  GGLGRATVLPWL-VTLAVSP-LRPPSAPYVR--ESMLDTHSLWSN 181
           GG  R T  P   VT   +P +RPPSAPY R     L +HSL  N
Sbjct: 203 GGFPRGTQFPGAAVTTPQAPYVRPPSAPYARTPPQPLGSHSLSGN 247


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 146  ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPXIINE 256
            E MLDT   +S++  E++ + +   +LSLKF  +  E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At5g61620.1 68418.m07732 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 317

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +2

Query: 47  RTAGGGLGRATVLPWLVTLAVSPLRPPSAPYVRESMLDTHSLWSNLANE 193
           RT   G+ +A+V  + V ++  P+RPP    +R+S L   +L + LAN+
Sbjct: 23  RTCLNGVNKASVKLFGVNISSDPIRPPEVTALRKS-LSLGNLDALLAND 70


>At5g57230.1 68418.m07150 expressed protein 
          Length = 160

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 ANEMQHLDNMMKELSLKFPXIINEGRVEGDKY 280
           +N  QHLD M++E + +F   I   RVE  KY
Sbjct: 60  SNYTQHLDRMLEEAAAEFYPNIKFMRVECPKY 91


>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 815

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 188 NEMQHLDNMMKELSLKFPXIINEGRVEG 271
           N+   L N MK++ +KF  +I++G +EG
Sbjct: 735 NKALLLSNQMKQVMIKFQNLIDDGDLEG 762


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 HSLWSNLANEMQHLDNMMKELSLKFP 241
           HS W  + +E +H+ N   E+ +K P
Sbjct: 686 HSTWEEVKSEREHIKNSYAEVEMKEP 711


>At4g14570.1 68417.m02243 acylaminoacyl-peptidase-related similar to
           Acylamino-acid-releasing enzyme (EC 3.4.19.1)
           (Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase)
           (Swiss-Prot:P13676) [Rattus norvegicus]; annotated with
           nonconsensus TT and CT acceptor splice sites.
          Length = 764

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
 Frame = +2

Query: 92  LVTLAVSPLRPPSAPYVRESMLDTHS---LWSNLANEMQHLDNMMKELS------LKFPX 244
           +V ++ SP+  P   Y ++ +        LWSN+ + +++ + +M  LS      LK P 
Sbjct: 440 IVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWSNIQSPIRYSEKVMAGLSSLQFKILKVPI 499

Query: 245 I-INEGRVEGDKYXI 286
             ++EG  EG K  I
Sbjct: 500 SDVSEGLAEGAKNPI 514


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/66 (12%), Positives = 34/66 (51%)
 Frame = +2

Query: 167 SLWSNLANEMQHLDNMMKELSLKFPXIINEGRVEGDKYXISIHLPGYXQKDINVKAKNGV 346
           ++ + L    ++++ +    ++    ++ + + + D Y +   +PG  ++D+ +   +G+
Sbjct: 99  TIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGI 158

Query: 347 LMVQAN 364
           L ++ +
Sbjct: 159 LTIKGD 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,877,571
Number of Sequences: 28952
Number of extensions: 204874
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)