Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...   136   3e-33
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    27   2.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   4.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   4.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.2  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    25   9.5  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.5  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score =  136 bits (328), Expect = 3e-33
 Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 3/210 (1%)
 Frame = +1

Query: 22  WGQRGAPMKIRDASVTVRPTWVTIEDMDFPRSCQTIITWLLKKVKILSVAVLXXXXXXXX 201
           W       ++R+ASVTV   W  +++++F    +  +      V + S   +        
Sbjct: 163 WKDYDKHQRLRNASVTVGDDWQLLDEVEFSHLSKLNLA-AAAPVTVDSYGYIYPYDKSFD 221

Query: 202 XXXXXXXXXPCQRIXRIFHTVTTTDDPVIRRLSKTA-GTVYATDAILATIMCCTRSNYSW 378
                    P Q + R+ +  TTT+DPVI++L+  +   ++ TD+IL+ +MC TRS Y W
Sbjct: 222 KIHVKSEK-PLQALDRVHYNPTTTEDPVIQKLALNSDANIFITDSILSLLMCSTRSVYPW 280

Query: 379 DIVIEKIGDKLFLDKRDNTEFDLLTVNETSVEPP--ADDGNSINSPRNLALEATFINHNF 552
           DIVI     KLF DKR+   FD LTVNE + + P  AD+   +NSP  L++EAT+IN NF
Sbjct: 281 DIVITHQSGKLFFDKREGGPFDYLTVNENAYDSPMDADNREGVNSPGALSVEATYINQNF 340

Query: 553 SQQVLKSGPTEPKYKFQEPNPFVSEEEDGE 642
             Q L+    E KYK   PNPF + +E+ E
Sbjct: 341 CVQALRE-TEEEKYKLPHPNPFYNSKEESE 369



 Score = 31.9 bits (69), Expect = 0.083
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 165 SCGTLEYYDKAYDRVNVKHEKPLPA 239
           S G +  YDK++D+++VK EKPL A
Sbjct: 209 SYGYIYPYDKSFDKIHVKSEKPLQA 233


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 120 PNYHYLAIKEGEDIVSCGTLEYYDK-AYDRVNVKHEKPLP 236
           P Y  LA++E   ++ CG   Y DK   DRV     K +P
Sbjct: 459 PQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIP 498


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +1

Query: 361 RSNYSWDIVIEKIGDKLFLDKRDNTEFDLLTVNETSVEPPADDGNSINSPRNLALEATFI 540
           R N S     + +  ++F  +   T+  L      +V PP    N  N   N +L + + 
Sbjct: 180 RDNISVPNQQDGLDPEVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYP 239

Query: 541 NHNFSQQVLKS 573
             +FSQ  L++
Sbjct: 240 QQHFSQPELQN 250


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 108 EVHIFNRDPCWPYSYRC 58
           +VH +++   WPY+Y C
Sbjct: 375 DVHSYSQSVLWPYAYTC 391


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 430 NTEFDLLTVNETSVEPPADDGNSINSPRNLALEATFINHNFSQQVLKSGPTEP 588
           N EF+  T  + S     + GNS+++P N   E      + S  VL  G  +P
Sbjct: 642 NEEFENSTSTDGSETNKNEQGNSLSTPDN---EPRLRKESLSSDVLLDGSEKP 691


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 382 IVIEKIGDKLFLDKRDNTEFDLLTVNETSVEP 477
           + I  IGD+L      + EFD+L+++ T   P
Sbjct: 91  LAIRPIGDRLLQQTCSDLEFDILSIDFTQRLP 122


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 120 PNYHYLAIKEGEDIVSCGTLEYYDKAYD--RVNVKHEKPL 233
           PN  +LA++EG   +   ++    + YD  RV  K E+PL
Sbjct: 23  PNVSFLAVEEGPASLRSYSIGNVSRIYDGIRVPPKPEEPL 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,444
Number of Sequences: 5004
Number of extensions: 51369
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)