Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B18
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0140 - 27982037-27983794 149 2e-36
09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148 31 0.61
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 0.80
04_04_0256 + 23974297-23974387,23974824-23974942,23975619-239764... 29 2.4
05_07_0213 + 28443724-28443775,28443901-28444007,28444757-284456... 28 7.5
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 27 9.9
05_01_0363 - 2846133-2846441,2846820-2846885,2847184-2847276,284... 27 9.9
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 27 9.9
>05_07_0140 - 27982037-27983794
Length = 585
Score = 149 bits (361), Expect = 2e-36
Identities = 76/132 (57%), Positives = 98/132 (74%), Gaps = 2/132 (1%)
Frame = +1
Query: 247 RIFHTVTTTDDPVIRRLSKT-AGTVYATDAILATIMCCTRSNYSWDIVIEKIGDKLFLDK 423
R F VTTTDDPVIRRL++ TV+ATDAILA +MC RS +SWDIV++++G+KLF DK
Sbjct: 226 RNFFKVTTTDDPVIRRLAEEDKATVFATDAILAALMCTPRSIHSWDIVVQRVGNKLFFDK 285
Query: 424 RDNTEFDLLTVNETSVEPPADDGNSINSPRNLALEATFINHNFSQQV-LKSGPTEPKYKF 600
RD ++ DLL+VNET+ E ++ + INS +LA+EAT+IN NFSQQV L+ G K F
Sbjct: 286 RDGSQLDLLSVNETAQEQLPENKDDINSAHSLAVEATYINQNFSQQVLLRDG---EKVTF 342
Query: 601 QEPNPFVSEEED 636
EPNPF SE E+
Sbjct: 343 DEPNPFASEGEE 354
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 153 EDIVSCGTLEYYDKAYDRVNVKHEKPLPAYXS 248
ED++ CG +EYYD+A+DRVN K + L + S
Sbjct: 194 EDLLLCGAVEYYDRAFDRVNPKAARRLERFKS 225
>09_04_0305 - 16516481-16516638,16517135-16517274,16519196-16520148
Length = 416
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 108 PTLLPNYHYLAIKEGEDIVSCGTLEYYDKAYDRVNVK 218
P L+P +L ++EG D+V C T E +A VN++
Sbjct: 203 PALIPKGCFLNLEEGHDVVRCRTDEALHRAKSLVNLQ 239
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 460 ETSVEPPADDGNSINSPRNLALEATFINHNFSQQVLKSGPTEPKYKFQE 606
E + +P DD ++I P ++++ NH + LKS + K K+ +
Sbjct: 394 ENAADPCEDDRSTIPVPMEVSMDIPVSNHTVGEDGLKSSKNKTKRKYSD 442
>04_04_0256 +
23974297-23974387,23974824-23974942,23975619-23976437,
23976626-23976781,23976878-23977252
Length = 519
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 72 KANMGH---D*RYGLPTLLPNYHYLAIKEGEDIVSCGTL 179
K +MGH D R LP+++PN L I+ G ++V L
Sbjct: 312 KLDMGHAICDARAKLPSIMPNLETLVIESGHEVVDAPML 350
>05_07_0213 +
28443724-28443775,28443901-28444007,28444757-28445644,
28445760-28445762,28446006-28446398
Length = 480
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 72 KANMGHD*RYGLPTLLPNYHYLAIKEGEDIVSCGTLEY 185
+AN H R LP+++PN L I+ G + V ++E+
Sbjct: 321 RANAVHYARAELPSIMPNLETLNIRSGPEAVQQRSMEH 358
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 559 QVLKSGPTEPKYKFQEPNPF 618
Q+ +GP+ P Y PNPF
Sbjct: 260 QISSAGPSSPTYNLVSPNPF 279
>05_01_0363 -
2846133-2846441,2846820-2846885,2847184-2847276,
2847487-2847600,2847762-2847849,2848116-2848199,
2848312-2848411,2848886-2848949,2849339-2849419,
2849944-2850000,2850188-2850387,2850668-2850971,
2851518-2851707,2851922-2852032,2852111-2852192,
2852443-2853046
Length = 848
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 454 VNETSVEPPADDGNSINSPRNLALEATFINHNFSQQVLKSGPTEPKYKFQEPNPFVSEEE 633
V+ + P+DDGN + +PR +++ +H S + G K P S++
Sbjct: 69 VSSNAEARPSDDGNKLVNPRKRLKQSSITDHLASNTGCRRGSCGEKASTSYPCLAASDDP 128
Query: 634 DGEVA 648
VA
Sbjct: 129 RAPVA 133
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 370 YSWDIVIEKIGDKLFLDKRDNTEFDLLTVNETSV 471
Y++D ++ I L +DK+ N DL+T+ E ++
Sbjct: 277 YAFDANVDSITQLLLVDKKINNARDLITILEDAI 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,931
Number of Sequences: 37544
Number of extensions: 337677
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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