Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B18
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 5e-23
SB_12099| Best HMM Match : DUF1220 (HMM E-Value=4.3) 31 1.1
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05) 28 5.8
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_339| Best HMM Match : Sterile (HMM E-Value=4.7) 28 5.8
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16) 28 7.6
SB_54436| Best HMM Match : PH (HMM E-Value=0.18) 28 7.6
>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 104 bits (250), Expect = 5e-23
Identities = 79/216 (36%), Positives = 109/216 (50%), Gaps = 3/216 (1%)
Frame = +1
Query: 13 GKRWG-QRGAPMKIRDASVTVRPTWVTIED--MDFPRSCQTIITWLLKKVKILSVAVLXX 183
G+ W ++ M R ASVTVR W +ED +DFPR + + +++ + L
Sbjct: 155 GRHWSDKKTGGMHKRVASVTVREEWKVLEDGELDFPRLSKLNLP-NVEEPETLYECGSVE 213
Query: 184 XXXXXXXXXXXXXXXPCQRIXRIFHTVTTTDDPVIRRLSKTAGTVYATDAILATIMCCTR 363
P + R+FH VTTTDDP+I +L + G V+ATDAI++T+M CT
Sbjct: 214 YYDKAYDRVTTKNEVPLVGVNRVFHKVTTTDDPIISKLL-SQGNVFATDAIISTLMTCT- 271
Query: 364 SNYSWDIVIEKIGDKLFLDKRDNTEFDLLTVNETSVEPPADDGNSINSPRNLALEATFIN 543
R N +D++ +TS IN+P NL+LEATFIN
Sbjct: 272 --------------------RSNYSWDIVV--QTS---------GINTPTNLSLEATFIN 300
Query: 544 HNFSQQVLKSGPTEPKYKFQEPNPFVSEEEDGEVAS 651
NFSQQVLK G + F PNPFV++E+D VAS
Sbjct: 301 QNFSQQVLKRGEVK---TFDHPNPFVTDEDDSTVAS 333
>SB_12099| Best HMM Match : DUF1220 (HMM E-Value=4.3)
Length = 713
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 469 VEPPADDGNSINSPRNLALEATFINHNFSQQVLKSGPTEPKY-KFQEPNPFVSEEEDGE 642
+EPP P+ L + + F+N+N S + T ++ KF+ P EE+G+
Sbjct: 428 IEPPITPPEPPRDPKFLEVTSPFVNYNVSPIPVSRARTPVRWKKFRPERPMGEIEEEGD 486
>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1665
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 256 HTVTTTDDPVIRRLSKTAGTVYATDAILATIMCCTRSNYSWDIV 387
H V D+ V ++L+ T G + +AI+ T Y WD+V
Sbjct: 1382 HRVRDRDNYVSKQLNPTFGRCFEFEAIIPMDSMLTVGIYDWDLV 1425
>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
Length = 572
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 132 YLAIKEGEDIVSCGTLEYYDKAYDRVNVKHEKPLPAY 242
Y + E I GTL+++ + Y+R NV EK +Y
Sbjct: 227 YTKLYSAESIREIGTLKFFREKYNRRNVTPEKVTRSY 263
>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1675
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 461 RPLSNLQLMMEILSILQETWHWKPPLSTITSVNR 562
+PL ++ ++L I+Q T +PP+ TS NR
Sbjct: 1504 QPLGEPEIAAQLLKIVQNTEPEEPPVGVFTSENR 1537
>SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)
Length = 206
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 461 RPLSNLQLMMEILSILQETWHWKPPLSTITSVNR 562
+PL ++ ++L I+Q T +PP+ TS NR
Sbjct: 160 QPLGEPEIAAQLLKIVQNTEPEEPPVGVFTSENR 193
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 108 PTLLPNYHYLAIKEGEDIVSC-GTLEYYDKAYDRVNVKHEKPLPAYXSYLPYGDN 269
P++L ++ + G+D +C L+Y D +R N KH P+ Y+ + N
Sbjct: 1344 PSVLQYVDHIQNRNGKDSSACPSVLQYVDHIQNR-NGKHSSTCPSVLQYVDHIQN 1397
>SB_7061| Best HMM Match : Carn_acyltransf (HMM E-Value=2.6e-16)
Length = 324
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 461 RPLSNLQLMMEILSILQETWHWKPPLSTITSVNR 562
+PL+ ++ ++L I+Q + +PP+ +TS NR
Sbjct: 191 KPLNEPEIAAQLLKIVQSSDAEEPPVGVLTSENR 224
>SB_54436| Best HMM Match : PH (HMM E-Value=0.18)
Length = 940
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 304 TAGTVYATDAILATIMCCTRSNYSWDIVIEKIGDKLFLDKRDNTEFDLLTVNETSVEP 477
T+ + DA + I TR +++ G KL+ +RDN D ++ET +P
Sbjct: 717 TSAAMKTRDAKIRAIPMSTRIWLCGHVIVTHEG-KLYRSRRDNVAIDRAFIDETGHDP 773
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,481,320
Number of Sequences: 59808
Number of extensions: 391612
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -