Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B18
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...   134   5e-32
AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score =  134 bits (324), Expect = 5e-32
 Identities = 85/216 (39%), Positives = 117/216 (54%), Gaps = 6/216 (2%)
 Frame = +1

Query: 13  GKRWGQRGAPMKIRDASVTVRPTWVTIEDMDFPRSCQTIITWLLKKVKILSVAV-LXXXX 189
           G R+G  G   K R  SV VRP WV +E+M+     +  +  +     I           
Sbjct: 164 GGRFG--GDRPKERLPSVQVRPEWVVLEEMNLSAFSKLALPNIPGGDDIGDHQYGSLQYY 221

Query: 190 XXXXXXXXXXXXXPCQRIXRIFHTVTTTDDPVIRRLSKT-AGTVYATDAILATIMCCTRS 366
                        P QR   +F+ VTTT+DPVI+ L++  AG V+ TD ILAT+M   RS
Sbjct: 222 DKTIDRVSVKNSIPLQRCAGVFYNVTTTEDPVIQELAQGGAGNVFGTDIILATLMTAPRS 281

Query: 367 NYSWDIVIEKIGDKLFLDKRDNTEF----DLLTVNETSVEPPADDGNSINSPRNLALEAT 534
            YSWDIV  ++GDKLF DKR+  +     + LTV+ETS EPP+ DGN IN+ ++LA EA 
Sbjct: 282 VYSWDIVAYRVGDKLFFDKRNTRDILNPVETLTVSETSAEPPSFDGNGINNAKDLATEAF 341

Query: 535 FINHNFSQQVLKSGPTEPKYKFQEPNPFVSEEEDGE 642
           +IN NF +QV+K    +  + F+       +EE GE
Sbjct: 342 YINQNFRRQVVKR--NDAGFTFKNARAPFEDEETGE 375



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 141 IKEGEDIVS--CGTLEYYDKAYDRVNVKHEKPL 233
           I  G+DI     G+L+YYDK  DRV+VK+  PL
Sbjct: 204 IPGGDDIGDHQYGSLQYYDKTIDRVSVKNSIPL 236


>AC006748-4|AAF60512.2|  371|Caenorhabditis elegans Hypothetical
           protein Y39A3B.1 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 485 MMEILSILQETWHWKPPLSTITSVNRC*NQVQRSLSTSSKNQTRSSLKRKMVK 643
           + ++LSI+         LSTI  ++R  + + + LS S  N+T  S+ R  +K
Sbjct: 4   LFKLLSIILGICQLALSLSTIADMDRMKHDLSKFLSISRFNETEKSVARAAIK 56


>Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical
           protein K09E9.2 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 274 DDPVIRRLSKTAGTVYATDAILATIMCCTRSNYSWDIVIEKIGDKLFLDKRDNTEFDL 447
           DD  ++ LS    T+ AT AI+  I+  T+   S +++     D    D+R + EFD+
Sbjct: 18  DDFRVKTLSGGLVTLIATIAIVLLIVLETKQFLSTEVLEHLFVDSTTSDERVHIEFDI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,055
Number of Sequences: 27780
Number of extensions: 291355
Number of successful extensions: 869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)