Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B17
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   1.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   8.9  

>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 23/75 (30%), Positives = 34/75 (45%)
 Frame = +1

Query: 421 EEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVPLLCYSTDGRAPSGSST 600
           E+   AER++ L  YP +K ++ G       +    P+DVE+V      TD +  + S  
Sbjct: 53  EQLFLAERERGLKYYPIYKLDVCGNG----GVNLLNPEDVELV-----LTDTKQNTKSFI 103

Query: 601 KPFLISQLSAKTXTS 645
             FL S L     TS
Sbjct: 104 YHFLHSWLGTGLLTS 118


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/33 (24%), Positives = 14/33 (42%)
 Frame = -1

Query: 461 WLRNFCLSANGYSSAQYLSQLSNCFELNPYLKP 363
           W +  CL      +   ++  +N    +PYL P
Sbjct: 84  WFKIHCLLQEQQQAGANMAAAANLLRPHPYLSP 116


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 395 WTVGSNIGQKNTHSLKG 445
           W V  +  QKNTH  KG
Sbjct: 311 WKVVWDDTQKNTHMYKG 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,709
Number of Sequences: 336
Number of extensions: 3440
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)