Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B17
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 29 0.77
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 27 1.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 27 1.8
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 26 4.1
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 5.5
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 26 5.5
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.2
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 9.5
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 9.5
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 9.5
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.5
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +2
Query: 320 ASRNEDLSPLHWRVLASNTGSIR--NNWTVGSNI-GQKNTHSLKGRSS 454
AS +E+L+P + LASNT ++ N+ + S+I G + T++L G+S+
Sbjct: 196 ASTSENLTPTSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKST 243
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 376 GFNSKQLDSWLKYWAEEYPFA-ERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVP 552
G S+QL S++ +A E +K N Y +FK N+ L+++ ++ +V D
Sbjct: 366 GIVSRQLLSFIAPFAPTPESKQELEKLGNDYDYFKKNVVDLHLNLAQVLRRVSPDAPFTK 425
Query: 553 L 555
L
Sbjct: 426 L 426
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 397 DSWLKYWAEEYPFAERQKFLNQY 465
++W YW YPF + K +Y
Sbjct: 39 ENWKSYWKSHYPFVKNDKGKKKY 61
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 359 PSNGGAKGLRFLMRSLSSFTIVSLKVISKGLMLVS 255
PSN +G+R L+ +L + ++ K + KGLM ++
Sbjct: 273 PSNPELEGVRELLSTLDAKKSLTDKALEKGLMAIT 307
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 501 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQ 394
N+QTLD+SL L+K+ + +++ + EPT+Q
Sbjct: 98 NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQ 134
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +1
Query: 325 KKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTN--IQGLN 498
KKR+P PP +G+ Y F K++ + + F + F + P ++ ++
Sbjct: 105 KKRKPTPPPSDGL--YYVFRGKRIKKSFRPGTDLSTFKPKLLFADSAPSSSSDNPTSSVD 162
Query: 499 IHFMRITPKVPKDVEIVPLLCYSTDGRAPSGSS 597
++ +P ++ + +S R PS SS
Sbjct: 163 LNDYSQIGILPPNLNSIGNKMFSLKSRVPSSSS 195
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 653 FQSEVXVFADSCEMRNGFVELPDGARPS 570
F S ++ S +RNGFVE+ PS
Sbjct: 118 FSSSFTMYGQSLRLRNGFVEMISMKLPS 145
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 121 FFLSPCRC*CWRPYHCT 171
FFL R CWR YH T
Sbjct: 559 FFLRKMRRKCWRVYHFT 575
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 573 IRGVTQKWYYFNVFRDLWSNPHEVNIQTL--DISLEMRILVKELL 445
++G+TQK+ + + WS +++ T+ D +++ +K LL
Sbjct: 890 MQGITQKYRFLELITSTWSAISSIHVLTITNDRDMDLEHSLKVLL 934
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 418 AEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITP 522
A ++P+A+R L P F + I G I+ + P
Sbjct: 581 ANDHPYAQRVFSLTCAPQFFSYINGYQIYLQQTNP 615
>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 522 WSNPHEVNIQTLDISLEMRILVKELLPFSEW 430
W N HE++ +T D+S I + ++L FS W
Sbjct: 46 WQN-HELHPKTRDVSTLDWIFLVDILNFSFW 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,334
Number of Sequences: 5004
Number of extensions: 57723
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -