Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B17
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0134 - 15596379-15597689                                         29   3.2  
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236...    29   4.3  
07_03_1558 - 27722852-27722963,27723191-27723240,27723338-277234...    28   5.6  
04_03_0132 - 11647230-11647432,11647520-11647982,11648159-116482...    28   5.6  
02_01_0717 + 5351504-5351602,5353401-5353499,5353574-5353675,535...    28   5.6  
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261...    28   7.5  
03_06_0424 + 33837032-33837634                                         28   7.5  

>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 180 KRGGTMVWTPALTAARR*KEDV 115
           K GG+ VW PALTA  R  +D+
Sbjct: 109 KSGGSSVWPPALTARNRSSKDM 130


>04_03_0448 -
           16020773-16021066,16023040-16023291,16023470-16023605,
           16023713-16023937,16024467-16024851,16025142-16025421
          Length = 523

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 570 RGVTQKWYYFNVFRDLWSNPHEVNIQTLDISLEMRILVKELLPFSEW 430
           R V    Y F   R+   NP  + +  LD +L  R+ +KEL   S W
Sbjct: 177 RRVEMVSYMFEYGREDGHNPVILELAKLDFNLLQRVHLKELKEISRW 223


>07_03_1558 -
           27722852-27722963,27723191-27723240,27723338-27723406,
           27723507-27723571,27724058-27724145,27724294-27724362
          Length = 150

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 317 NASRNEDLSPLHWRVLASNTGSIRNNWTVGSNIGQKNTH 433
           NA+ +E  +PLHW  L  +   I+     G+++   N+H
Sbjct: 77  NATNSEKNTPLHWACLNGHIEVIKALICAGASVSALNSH 115


>04_03_0132 -
           11647230-11647432,11647520-11647982,11648159-11648271,
           11648956-11649412
          Length = 411

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 403 WLKYWAEEYPFAERQKFLNQYPHF 474
           W KY+  +  +A R  FL  YPHF
Sbjct: 344 WGKYFLVDSGYASRYGFLPSYPHF 367


>02_01_0717 +
           5351504-5351602,5353401-5353499,5353574-5353675,
           5353756-5353815,5353900-5354006,5354114-5354196,
           5354372-5354462,5354561-5354768
          Length = 282

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 345 GERSSFLDAFFKFFYHRFTESDLEGFDA 262
           GE +  L  +F+  Y + TE+D+E F+A
Sbjct: 104 GEAADNLQEYFRAVYKKVTEADIEEFEA 131


>07_03_0762 +
           21324550-21325414,21325606-21325746,21325993-21326177,
           21326200-21326410,21326526-21326769,21326853-21327003,
           21327089-21327439
          Length = 715

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = -1

Query: 467 GYWLRNFCLSANGYSSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLMRSLSSFTIVSL 288
           G W  NF      + S + L QL    E  P   P PS     G +   R  +   IV  
Sbjct: 249 GVWC-NFRYEVFPFFSGRPLLQLPAFVETPP---PPPSPSATSGEKTKNRIGTVLAIVMP 304

Query: 287 KVISKGLMLVSCFC 246
            + +  LM+V+CFC
Sbjct: 305 AIAAILLMVVACFC 318


>03_06_0424 + 33837032-33837634
          Length = 200

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 95  LIVHQDVTSSFYRLAAVSAGVHTIVPPRF*RVHRRCLSSTWRSGGD 232
           L+VH       YR  A  AG   +V P   R   RC ++ W S  D
Sbjct: 40  LLVHVVDEDDDYRYCAADAGDDGVVQPPRLRCCERCAAAPWLSRHD 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,294,333
Number of Sequences: 37544
Number of extensions: 382745
Number of successful extensions: 1100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)