Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B17
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               29   3.3  
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_29973| Best HMM Match : RVT_1 (HMM E-Value=5.2e-21)                 28   5.8  
SB_41228| Best HMM Match : DUF1014 (HMM E-Value=2.9)                   28   7.6  
SB_16951| Best HMM Match : Ribosomal_S20p (HMM E-Value=8.8)            28   7.6  
SB_17150| Best HMM Match : Peptidase_S51 (HMM E-Value=6.6)             28   7.6  

>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 158 HTIVPPRF*RVHRRCLSSTWRSGGDR 235
           HT  P  F    +RC+ S WR  GDR
Sbjct: 549 HTCRPNEFTCADKRCILSRWRCDGDR 574


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 425 SSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLMRSLSSFTIVSLKVISKGLMLVSC 252
           +S++Y + + +  EL  YLKP  S+ G          LSS T ++  +  K + LV+C
Sbjct: 94  NSSKYQAAMRSIEELAMYLKPVASSQGTSQSSNGTNGLSSSTTLTRPMQRKLVTLVNC 151


>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 158 HTIVPPRF*RVHRRCLSSTWRSGGDR 235
           HT  P  F    +RC+ S WR  GDR
Sbjct: 704 HTCRPNEFTCADKRCILSRWRCDGDR 729


>SB_29973| Best HMM Match : RVT_1 (HMM E-Value=5.2e-21)
          Length = 499

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 472 FKTNIQGLNIHFMRITPKVPKDVEIVPLLCY 564
           F+TNI+GL +    I   VP D+ I P L Y
Sbjct: 47  FETNIRGLEVPVEPIPFPVPDDLLITPRLVY 77


>SB_41228| Best HMM Match : DUF1014 (HMM E-Value=2.9)
          Length = 308

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 SGGDRPNLSRNRIPASNPSRSLSVKRW*KNLKNASRNEDLSPL 349
           SG +R    RN+I A NP++  + K   +  K  SR + LSPL
Sbjct: 9   SGAERNRKYRNKIRA-NPAKPAAYKAKDRQRKCESRKKTLSPL 50


>SB_16951| Best HMM Match : Ribosomal_S20p (HMM E-Value=8.8)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 SGGDRPNLSRNRIPASNPSRSLSVKRW*KNLKNASRNEDLSPL 349
           SG +R    RN+I A NP++  + K   +  K  SR + LSPL
Sbjct: 9   SGAERNRKYRNKIRA-NPAKPAAYKAKDRQRKCESRKKTLSPL 50


>SB_17150| Best HMM Match : Peptidase_S51 (HMM E-Value=6.6)
          Length = 152

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 SGGDRPNLSRNRIPASNPSRSLSVKRW*KNLKNASRNEDLSPL 349
           SG +R    RN+I A NP++  + K   +  K  SR + LSPL
Sbjct: 9   SGAERNRKYRNKIRA-NPAKPAAYKAKDRQRKCESRKKTLSPL 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,468,875
Number of Sequences: 59808
Number of extensions: 413803
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)