Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B17
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    82   3e-16
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    59   2e-09
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    30   1.6  
Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024790-12|AAL32248.2|   97|Caenorhabditis elegans Hypothetical...    29   2.9  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
 Frame = +1

Query: 244 KQKQD-TSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVG-FKYGFNSKQLDSWLKYW 417
           K K D T IKPF++   ++++ +LK R++  R     LE    F YGFNSKQL     YW
Sbjct: 41  KAKPDNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDDFYYGFNSKQLLKLRDYW 100

Query: 418 AEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVE-IVPLL 558
             +Y + +++  +NQ+P FKT I+GL +HF+ + P  PK  + + P+L
Sbjct: 101 LNKYDWRKQEATINQFPQFKTEIEGLQVHFLHVKP--PKSYKNVKPIL 146



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 504 LHEDYSKGP*RR*NSTTSVLLHGWPGSVREFYEAIPHLTAVSK---DXNFALE 653
           +H  + K P    N    ++ HGWPG+V EFY+ IP LT   K   D +FA E
Sbjct: 128 VHFLHVKPPKSYKNVKPILVAHGWPGNVFEFYKFIPLLTDPKKHGIDSDFAFE 180


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = +1

Query: 217 EEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQL 396
           +++W   +  +K D +I  F I   E+ V   KE+++  R F P L    +    N    
Sbjct: 36  DDYWKLDD-PEKDDDTIYSFTIDIKESEVSNFKEKLESER-FLPTLYDTNYDNYLNE--- 90

Query: 397 DSWLKYWAEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRI-TPKVPKDVEIVPLLCY 564
              LK     + + + Q FLN +  +KT I+GL IHF+R+ TP   K   +VPLL +
Sbjct: 91  ---LKQVLLGFNWKQHQHFLNTFKQYKTEIEGLKIHFLRVSTPPKDKKSRVVPLLIF 144



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 558 VLLHGWPGSVREFYEAIPHLTAVSK 632
           ++ HG+PGS  +F++ IP LT  S+
Sbjct: 142 LIFHGFPGSFWDFFKIIPILTNPSR 166


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 349 PLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFK 477
           P EG G +  F  +Q      ++ E Y F   +  +NQ+ HFK
Sbjct: 175 PTEGDGIEDLFQLEQFQKSRDFYMESYAFDTTKTSINQFFHFK 217


>Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical
           protein R12G8.2 protein.
          Length = 562

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -2

Query: 241 VRAVPTTPPGRA*ASAVDSSEARRYNGMDASTNSGKAIKRRRDILMH 101
           V+ V +T  G + A +VDS E R ++G   S +    I RRR+ +M+
Sbjct: 469 VKTVRSTSSGSS-AESVDSKEPRGFDGDSDSGSDDGVINRRRNEMMN 514


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 433 FAERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVPLL 558
           F + +   N+YP FKT      I F  I  +VP  V ++PL+
Sbjct: 562 FEKCRAVTNKYPEFKTTPFDTEIGFADIILQVPLVVAVIPLV 603


>AC024790-12|AAL32248.2|   97|Caenorhabditis elegans Hypothetical
           protein Y47D7A.15 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 309 T*RTHQ-ETKTFRPSIGGCWLQIRVQFETIGQLAQILGRRIP 431
           T R H  +T  F+P  G C +Q++ +  +  QLAQ LG RIP
Sbjct: 9   TDRDHSLKTMKFKPLRGACDIQMKKKRRS-RQLAQFLGIRIP 49


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 355 EGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNI 486
           +GV     + ++ ++  +  W+E  P A+  KF N+  H++T +
Sbjct: 303 QGVKALERYETENMNEEVTDWSEPKPLAKFYKFFNKTLHYETTV 346


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -2

Query: 241 VRAVPTTPPGRA*ASAVDSSEARRYNGMDASTNSGKAIKRRRDILMHY*VHS*QLYHLIL 62
           +R  P++  G        ++ ARR N M    NSG     ++ + +   V S  LYH   
Sbjct: 38  LRRTPSSDAGNMNQIHFGTASARRRNAMILENNSGDEDAPKQGLFIVVCVVSHMLYHTNT 97

Query: 61  IINRYQNATCA 29
            + +Y +  C+
Sbjct: 98  YLFQYISKYCS 108


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
            ZK593.5 protein.
          Length = 1326

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 289  SETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPF 435
            +E MV+E++    KR  F   L  V      N +    W   W EEYPF
Sbjct: 1255 TEKMVEEMEIFNVKREQFFDKLNSV------NRRLRRVWFDAWGEEYPF 1297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,087,814
Number of Sequences: 27780
Number of extensions: 316679
Number of successful extensions: 884
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)