Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B15
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12210.2 68416.m01524 expressed protein 80 1e-15
At3g12210.1 68416.m01523 expressed protein 71 9e-13
At1g61980.1 68414.m06991 mitochondrial transcription termination... 33 0.16
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica... 31 0.50
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 31 0.66
At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family p... 31 0.88
At5g26020.1 68418.m03096 hypothetical protein 30 1.2
At1g61990.1 68414.m06992 mitochondrial transcription termination... 30 1.5
At1g61960.1 68414.m06989 mitochondrial transcription termination... 30 1.5
At1g62110.1 68414.m07008 mitochondrial transcription termination... 29 3.5
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 28 6.2
At1g61970.1 68414.m06990 mitochondrial transcription termination... 28 6.2
At1g62150.1 68414.m07011 mitochondrial transcription termination... 27 8.2
At1g62085.1 68414.m07006 mitochondrial transcription termination... 27 8.2
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 79.8 bits (188), Expect = 1e-15
Identities = 43/137 (31%), Positives = 72/137 (52%)
Frame = +1
Query: 217 ELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSYLIKVNTPRAV 396
EL+ LD +Y+ +LP + R + ++ EL QLMKWK + GK+ P+L + V
Sbjct: 31 ELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDSVV 90
Query: 397 MQETKKAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXXXXXXFMADECVQAIPEMEG 576
++KAF+ LP+I A+ L+ LKGVG FM+DE ++ +
Sbjct: 91 KSASEKAFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDEAME-VALGNS 149
Query: 577 SDYTAREYLNFVSHIRN 627
DY+ ++YL F + +++
Sbjct: 150 KDYSLKQYLLFATKLQD 166
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 70.5 bits (165), Expect = 9e-13
Identities = 38/110 (34%), Positives = 57/110 (51%)
Frame = +1
Query: 217 ELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSYLIKVNTPRAV 396
EL+ LD +Y+ +LP + R + ++ EL QLMKWK + GK+ P+L + V
Sbjct: 31 ELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDSVV 90
Query: 397 MQETKKAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXXXXXXFMADE 546
++KAF+ LP+I A+ L+ LKGVG FM+DE
Sbjct: 91 KSASEKAFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDE 140
>At1g61980.1 68414.m06991 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 67 VVHLERSQLATAKDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 240
+ H E+ L T + TF L + EF ++K +PQ I L AE K+ + L+K NW
Sbjct: 285 LTHSEKKILNTIE---TFLGLGFSRDEFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNW 340
>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1261
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +1
Query: 301 EELVQLMKWKQAXGKFYPQLSYLIKVNTPRAVM-----QETKKAFRKLPNIESAMTALSN 465
E+ LMK + + GKF P LS+L +T ++++ +TK ++ + + E + + LS+
Sbjct: 169 EDCTSLMKTRLSLGKFLPDLSWLTVTSTLKSIVFQIRTVQTKMVYQIVTDEEGSSSTLSS 228
Query: 466 L 468
+
Sbjct: 229 M 229
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 73 HLERSQLATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAE 195
HL + K+ +T FLE + +++ L Y QAI L A+
Sbjct: 75 HLHHLRFLALKNLATVFLELGSSHYENALNCYLQAIDLDAK 115
>At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 166
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +1
Query: 241 YQNELPK---KIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSYLIKVNTPRAVMQETK 411
++NE+ + K+K+R KD MI+ + Q KF+ L Y+ + +TP++ +E K
Sbjct: 90 HENEIDRNLVKVKTRAKDMAMIYLQKAI----NQGQTKFFEILQYITEQSTPKSKAEEKK 145
Query: 412 K 414
+
Sbjct: 146 E 146
>At5g26020.1 68418.m03096 hypothetical protein
Length = 241
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 402 RDEKGLPQTAQYRIRDDRSKQSQRRGNGHSIS 497
RDE G P T + ++ + + ++QRRG G S
Sbjct: 106 RDETGTPMTQRKKVCEPEASKTQRRGKGDEAS 137
>At1g61990.1 68414.m06992 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 414
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 LERSQLATAKDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE 252
L+ S+ K TF L + EF ++K YP I+ E K+ + L+K W +N
Sbjct: 278 LKVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNA 337
Query: 253 L 255
L
Sbjct: 338 L 338
>At1g61960.1 68414.m06989 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 142 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 240
EF ++K YPQ I AE K+ + ++K NW
Sbjct: 344 EFAMMVKRYPQCIDYTAETVKKKTEFIVKNMNW 376
>At1g62110.1 68414.m07008 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 462
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 142 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 240
EF +++K +PQ + L AE K+ + ++K NW
Sbjct: 345 EFITMVKRFPQCLILSAETVKKKIEFVVKKMNW 377
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 175 AIKLKAER--KTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKF 348
A+K ER K K+ ++L+ D + L + +RG D H+ + L+K A G F
Sbjct: 477 AVKRLRERSPKVKKREKLVVFDYMSRGSLATFLHARGPDVHINWPTRMSLIK-GMARGLF 535
Query: 349 Y 351
Y
Sbjct: 536 Y 536
>At1g61970.1 68414.m06990 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 VHLERSQLATAKDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 240
+ L S+ TF L + EF ++K +P I L E K+ + L+K NW
Sbjct: 283 ISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNW 340
>At1g62150.1 68414.m07011 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 463
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 76 LERSQLATAKDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 240
L S+ TF L + EF ++K PQ I AE K+ + ++K NW
Sbjct: 328 LRASEQQILNSMETFIGLGFSRDEFVMMVKCLPQCIGYSAEMVKKKTEFVVKKMNW 383
>At1g62085.1 68414.m07006 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 461
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 142 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 240
E + K +PQ + L AE K+ + L+K NW
Sbjct: 348 EVAMIAKRFPQCLILSAETVKKKTEFLVKKMNW 380
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,930
Number of Sequences: 28952
Number of extensions: 276316
Number of successful extensions: 724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -