Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B12
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    28   0.058
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    28   0.058
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   1.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 244 HEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVTTETEMNXETCLQV 423
           HEP  A+Y ++N   +   Y G V  Y+       P   S ++ P T    M     +Q 
Sbjct: 412 HEPGAAYYQNENMLQKNAEYSGKVGYYENNHYNGDPNYISPEVFPNTNNAIMTPPASVQT 471

Query: 424 NSTQD 438
            S+ +
Sbjct: 472 ESSDN 476


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 244 HEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVTTETEMNXETCLQV 423
           HEP  A+Y ++N   +   Y G V  Y+       P   S ++ P T    M     +Q 
Sbjct: 360 HEPGAAYYQNENMLQKNAEYSGKVGYYENNHYNGDPNYISPEVFPNTNNAIMTPPASVQT 419

Query: 424 NSTQD 438
            S+ +
Sbjct: 420 ESSDN 424


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 229 VYLGVPLLCILDSIVVATLYRHIQMRRPRK 140
           V +  PL+  L + V    YRH Q RR  +
Sbjct: 383 VLIIAPLIATLIATVTVNYYRHKQKRRDER 412


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 190 IVVATLYRHIQMRRPRKNTTTQRIT*FDRR 101
           IV   L +H   R+PR   TTQ++   +++
Sbjct: 104 IVRCALRKHKPNRKPRTPFTTQQLLALEKK 133


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 259 AWYDSKNSKSRIDYYGGM 312
           AW+D  ++ S +D  GGM
Sbjct: 188 AWWDVHSTGSWLDMSGGM 205


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 307 LHSNRFLICCSYCRTKHRMAHAVQH 233
           +H+N     C  CR + R  H + H
Sbjct: 240 IHTNEKPFECDKCRGRFRRRHHLVH 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,794
Number of Sequences: 336
Number of extensions: 3406
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)