Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B06
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     102   2e-22
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     82   4e-16
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  33   0.15 
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   31   0.82 
SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)            29   2.5  
SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)            29   2.5  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 29   4.4  
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)                 29   4.4  
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_57531| Best HMM Match : RVT_1 (HMM E-Value=2.9e-10)                 28   7.6  
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_45694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_38694| Best HMM Match : RVT_1 (HMM E-Value=3.8e-09)                 28   7.6  
SB_2303| Best HMM Match : RVT_1 (HMM E-Value=7.9e-11)                  28   7.6  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score =  102 bits (245), Expect = 2e-22
 Identities = 54/139 (38%), Positives = 80/139 (57%)
 Frame = +3

Query: 237 IDYVTDIRRMLYPEEDTPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRD 416
           +D+  D+ + LYP+E+ P  ++++R  V+ EL++LQ    P+            I    D
Sbjct: 6   VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSD 53

Query: 417 PKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLS 596
           P+            + K EM+D +Y+ AK++YECGNY  +A YLYF + +    D N L+
Sbjct: 54  PEFTA---------QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLN 104

Query: 597 VLWGKLASEILVQNWDGAL 653
            LWGKLASEIL+QNWD AL
Sbjct: 105 ALWGKLASEILMQNWDTAL 123


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = +3

Query: 474 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEILVQNWDGAL 653
           M+D +Y+ AK++YECGNY  +A YLYF + +    D N L+ LWGKLASEIL+QNWD AL
Sbjct: 1   MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTAL 60


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +3

Query: 363 LRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESAS 542
           ++L +   V +T  T    + L N L   KEY+  +E+    YRL K R   G + E+A 
Sbjct: 712 IKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHPETAR 769

Query: 543 YLYFCQLV 566
            LY   ++
Sbjct: 770 ILYMIGVI 777


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 261 RMLYPEEDTPEXIIQRRGVVLSELQELQDAVXPVLR-LMQRDDVMKTIETMRDPKTLINH 437
           R LYPE +     + +  V    + ELQ A+    R L+++   + TI  + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570

Query: 438 LSTNKEYEFKIEMIDSM 488
           L  ++ +  + ++  +M
Sbjct: 571 LCASEGFREQGDLAAAM 587


>SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)
          Length = 58

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 438 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 536
           +S N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 15  MSCNSSYEAKLKRSSSRMRLAKHRHILHHYTEN 47


>SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
          Length = 45

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 438 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 536
           +S N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 2   MSCNSSYEVKLKRSKSRMRLAKHRHILHHYTEN 34


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
 Frame = +3

Query: 303  QRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 464
            +R   +L +++EL   V  + + +++  ++K ++ + D K TLI   +T     NKE+E 
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913

Query: 465  KIEMIDSMYR 494
            K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923


>SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 438 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 536
           LS N  YE K++   S  RLAK+R+   +Y E+
Sbjct: 37  LSCNLNYEAKLKRSKSRLRLAKHRHILHHYTEN 69


>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  KNY    +  F   F  ++H+  +S +
Sbjct: 57  YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHNVLMSEL 96


>SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 329

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 90  YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 129


>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
          Length = 710

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 417 YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 456


>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 269 YFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSEL 308


>SB_57531| Best HMM Match : RVT_1 (HMM E-Value=2.9e-10)
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 35  YFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSEL 74


>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = +3

Query: 168  AKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEXIIQRRGVVLSELQELQD 347
            A+ET +  + LQ K     K  + + ++D+   +  EE+    + + +  +L E+Q+L+D
Sbjct: 934  AQETEEMRQRLQTK-----KNELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLED 988

Query: 348  AV 353
            ++
Sbjct: 989  SL 990


>SB_45694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 21  YFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSEL 60


>SB_38694| Best HMM Match : RVT_1 (HMM E-Value=3.8e-09)
          Length = 457

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 220 YFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSEL 259


>SB_2303| Best HMM Match : RVT_1 (HMM E-Value=7.9e-11)
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 362 YWLYCILKFLQFRKNYTSPLYNXFRSVFFRIEHSSDVSNI 243
           Y+L+CIL+ L+  +NY    +  F   F  ++H+  +S +
Sbjct: 35  YFLHCILESLERGENYVRIFFADFSKGFDLVDHNVLMSEL 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,619
Number of Sequences: 59808
Number of extensions: 365819
Number of successful extensions: 864
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)