Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B06
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57290.1 68416.m06377 eukaryotic translation initiation facto...   156   1e-38
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    28   4.7  
At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...    28   6.2  
At5g61690.1 68418.m07740 ABC transporter family protein ABC tran...    27   8.2  

>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score =  156 bits (378), Expect = 1e-38
 Identities = 75/190 (39%), Positives = 123/190 (64%)
 Frame = +3

Query: 84  SYSKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRR 263
           S   +DLT  I   LDRHLVFP+ EFL  ++ Y   ++L++K+++L++TNM+DY  DI +
Sbjct: 4   SKQNYDLTPLIAPNLDRHLVFPIFEFLQERQLYPDEQILKSKIQLLNQTNMVDYAMDIHK 63

Query: 264 MLYPEEDTPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPKTLINHLS 443
            LY  ED P+ +++RR  V++ L+ L++A  P++  +   +    ++ +R  K   N   
Sbjct: 64  SLYHTEDAPQEMVERRTEVVARLKSLEEAAAPLVSFLLNPN---AVQELRADKQ-YNLQM 119

Query: 444 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASE 623
             + Y+   + I+++Y+ AK+++ECGNY  +A YLY  + + S  +++ LS LWGKLASE
Sbjct: 120 LKERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRTLCSNLERS-LSALWGKLASE 178

Query: 624 ILVQNWDGAL 653
           IL+QNWD AL
Sbjct: 179 ILMQNWDIAL 188


>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +3

Query: 183 DQSELLQAKLEILSKTNMIDYVTDIRRMLYPEE---DTPEXIIQRRGVVLSELQELQDAV 353
           +QS  L  +++   +   +D   ++RR L  +E   D     ++     LS    LQD  
Sbjct: 8   NQSFKLHQQVQCKDEIFCLDQKVNVRRSLQVQETVEDHQSFALEEEEQQLSTPSLLQDTT 67

Query: 354 XPVLRLMQRDDVMKTIETMRDPKTL 428
            P L+++Q+ +      + +DP  L
Sbjct: 68  IPFLQMLQQSEDPSPFLSFKDPSFL 92


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
 Frame = +3

Query: 168 AKETYDQSELLQAKLEILSKT-----NMIDYVTDIRRMLYPEEDTPEXIIQRRGVVLSEL 332
           A+E  ++ ++++ K++  +K      NM   V D  ++     D  +  ++  GV+   L
Sbjct: 567 AEEFAEEDKIMKEKIDARNKLETYVYNMKSTVADKEKLAKKISDEDKEKME--GVLKEAL 624

Query: 333 QELQDAVXPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRL 497
           + L++ V         D+ +K +E + DP     +  T  E E  +EMI   YR+
Sbjct: 625 EWLEENVNAEKE--DYDEKLKEVELVCDPVIKSVYEKTEGENEDTMEMITMSYRI 677


>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 162 LAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 269
           L A  ++D+SEL Q  ++ ++  N ++ V D+R ++
Sbjct: 264 LCALASFDRSELKQKVIDNINFRNFLELVPDVRELI 299


>At5g61690.1 68418.m07740 ABC transporter family protein ABC
           transport protein, Dictyostelium discoideum, PIR:T18288
          Length = 954

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 653 ERAIPILYQNFASQFTPKNRQIILVSWRHHQLTKVKI 543
           +  +P+LYQ F + F  KN   +L+SWR+ + T ++I
Sbjct: 4   QEGLPLLYQQFTALFG-KN---LLLSWRNKRATCLQI 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,819
Number of Sequences: 28952
Number of extensions: 253315
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)