Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_B05
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 187 1e-48
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 116 4e-27
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 73 3e-14
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 69 6e-13
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 57 3e-09
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 57 3e-09
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 54 2e-08
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 54 2e-08
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 54 2e-08
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 50 4e-07
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 46 5e-06
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 45 1e-05
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 44 3e-05
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 42 6e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.027
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 2.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 2.4
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 27 3.1
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 26 5.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.5
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 187 bits (455), Expect = 1e-48
Identities = 93/165 (56%), Positives = 116/165 (70%), Gaps = 18/165 (10%)
Frame = +2
Query: 200 EHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQR 379
+ K L+ IRNIGISAHIDSGKTT TER+L+YTGRI +HEV+GKDNVGA MD MELER++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREK 111
Query: 380 GITIQSAATYTIW------------------KEHNINIIDTPGHVXFTVXXXRXXXXXXX 505
GITIQSAAT+ W K +NINIIDTPGH+ FT+ R
Sbjct: 112 GITIQSAATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDG 171
Query: 506 XXXXXCSVXGVQSQTLTVNRQMKRYNVPCLAFINKLDRLXANPXR 640
C+V GVQSQT+TV+RQM+RYNVP ++F+NK+DR+ A+P +
Sbjct: 172 AVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPWK 216
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 116 bits (278), Expect = 4e-27
Identities = 60/147 (40%), Positives = 83/147 (56%)
Frame = +2
Query: 191 KYAEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELE 370
+Y + + +IRN+GI AHID+GKTTLTE++L+Y G V D VMD + E
Sbjct: 18 RYQSNISINSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNV---DTGDTVMDYLPAE 74
Query: 371 RQRGITIQSAATYTIWKEHNINIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQT 550
RQRGITI SAA W+ IN+IDTPGH FT R GV++QT
Sbjct: 75 RQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQT 134
Query: 551 LTVNRQMKRYNVPCLAFINKLDRLXAN 631
V +Q + +P + F+NK+DR+ ++
Sbjct: 135 KVVWKQATKRGIPKVIFVNKMDRVGSS 161
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 73.3 bits (172), Expect = 3e-14
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Frame = +2
Query: 209 PLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGIT 388
P +RN + AHID GK+TL++ IL TG I++ H + + +D +E+ER+RGIT
Sbjct: 54 PQNRVRNWAVIAHIDHGKSTLSDCILKLTGVINE-HNFRNQ-----FLDKLEVERRRGIT 107
Query: 389 IQSAATYTIWKEHN----INIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLT 556
+++ I+ H +N+IDTPGHV F + G+Q+QTL+
Sbjct: 108 VKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLS 167
Query: 557 VNRQMKRYNVPCLAFINKLDRLXANPXR 640
N+ + +NK+D A+ R
Sbjct: 168 NFYMAFSQNLVIIPVLNKVDLPTADVDR 195
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 68.9 bits (161), Expect = 6e-13
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Frame = +2
Query: 206 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 385
K ENIRN + AH+D GKTTL + +L G I ++ G +D E E RGI
Sbjct: 14 KNQENIRNFTLLAHVDHGKTTLADSLLASNGIISS--KLAG---TVRFLDFREDEITRGI 68
Query: 386 TIQSAATYTIW------------KEHNINIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSV 529
T++S+A + K++ IN+ID+PGHV F+ +V
Sbjct: 69 TMKSSAISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAV 128
Query: 530 XGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 622
GV SQT+TV RQ + + INK+DRL
Sbjct: 129 EGVCSQTITVLRQAWIDRIKVILVINKMDRL 159
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 56.8 bits (131), Expect = 3e-09
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Frame = +2
Query: 206 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 385
KP N+RN+ + AH+D GK+TLT+ ++ G I K MD+ E++RG+
Sbjct: 15 KP-SNVRNMSVIAHVDHGKSTLTDSLVQKAGIIS-----AAKAGDARFMDTRADEQERGV 68
Query: 386 TIQSAA-------TYTIWKEHN---------INIIDTPGHVXFTVXXXRXXXXXXXXXXX 517
TI+S A T K+ +N+ID+PGHV F+
Sbjct: 69 TIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 518 XCSVXGVQSQTLTVNRQMKRYNVPCLAFINKLDR 619
++ GV QT TV RQ + + +NK+DR
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIRPVVVVNKVDR 162
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 56.8 bits (131), Expect = 3e-09
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Frame = +2
Query: 206 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 385
KP N+RN+ + AH+D GK+TLT+ ++ G I K MD+ E++RG+
Sbjct: 15 KP-SNVRNMSVIAHVDHGKSTLTDSLVQKAGIIS-----AAKAGDARFMDTRADEQERGV 68
Query: 386 TIQSAA-------TYTIWKEHN---------INIIDTPGHVXFTVXXXRXXXXXXXXXXX 517
TI+S A T K+ +N+ID+PGHV F+
Sbjct: 69 TIKSTAISLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 518 XCSVXGVQSQTLTVNRQMKRYNVPCLAFINKLDR 619
++ GV QT TV RQ + + +NK+DR
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIRPVVVVNKVDR 162
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +2
Query: 227 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 376
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 377 RGITIQSAATYTIWKEHNINIIDTPGHVXF 466
RGITI A ++N+ +ID PGH F
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDF 98
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +2
Query: 227 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 376
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 377 RGITIQSAATYTIWKEHNINIIDTPGHVXF 466
RGITI A ++N+ +ID PGH F
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDF 98
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 53.6 bits (123), Expect = 2e-08
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +2
Query: 227 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 376
N+ + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Query: 377 RGITIQSAATYTIWKEHNINIIDTPGHVXF 466
RGITI A ++N+ +ID PGH F
Sbjct: 69 RGITIDIALWKFETPKYNVTVIDAPGHRDF 98
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 49.6 bits (113), Expect = 4e-07
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Frame = +2
Query: 227 NIGISAHIDSGKTTLTERILFYTGRIDQ--MHEVK------GKDN--VGAVMDSMELERQ 376
NI H+D+GK+TL ILF TG +D+ M +++ GK++ + +DS ER+
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Query: 377 RGITIQSAATYTIWKEHNINIIDTPGH 457
+G T++ Y + +++D PGH
Sbjct: 300 KGKTVEVGRAYFETEHRRFSLLDAPGH 326
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 46.0 bits (104), Expect = 5e-06
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Frame = +2
Query: 236 ISAHIDSGKTTLTERILFYTGRID-----QMHEV-----KGKDNVGAVMDSMELERQRGI 385
++ H+DSGK+T+ RI+F G I+ ++H KG + ++D+ E ER RG+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 386 TIQSAATYTIWKEHNINIIDTPGHVXF 466
T+ A+T + I D PGH F
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDF 268
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 44.8 bits (101), Expect = 1e-05
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +2
Query: 155 FQIELQKYSSHVKYAEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKD 334
F + + Y+ + KP NI IG H+D GKTTLT I T + + + D
Sbjct: 34 FTVPARTYADEKVFVRKKPHVNIGTIG---HVDHGKTTLTAAI---TKCLSDLGQASFMD 87
Query: 335 NVGAVMDSMELERQRGITIQSA-ATYTIWKEHNINIIDTPGHVXF 466
+ +D E+ RGITI SA Y H + +D PGH +
Sbjct: 88 Y--SQIDKAPEEKARGITISSAHVEYETANRHYAH-VDCPGHADY 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 43.6 bits (98), Expect = 3e-05
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Frame = +2
Query: 215 ENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQ 394
+++R+ ++ H+ GK+ L + +++YT K D+ LER+R ++I+
Sbjct: 138 DDVRSFIVAGHLHHGKSALLDLLVYYT----HPDTKPPKRRSLRYTDTHYLERERVMSIK 193
Query: 395 S-----AATYTIWKEHNINIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLTV 559
S A + K IDTPGHV F + GV T +
Sbjct: 194 STPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRI 253
Query: 560 NRQMKRYNVPCLAFINKLDRL 622
+ +++P + +NK+DRL
Sbjct: 254 IKHAILHDMPIVLVLNKVDRL 274
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 42.3 bits (95), Expect = 6e-05
Identities = 31/129 (24%), Positives = 53/129 (41%)
Frame = +2
Query: 236 ISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSAATYTI 415
I H+D+GKT L + + + + +GA +E +Q+ +
Sbjct: 489 ILGHVDTGKTKLLDNLR--RSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKKGKLQ- 545
Query: 416 WKEHNINIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLTVNRQMKRYNVPCL 595
+ + IIDTPGH FT R + G++ QT+ R ++ P +
Sbjct: 546 YNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFV 605
Query: 596 AFINKLDRL 622
+NK+DRL
Sbjct: 606 VALNKVDRL 614
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 431 INIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLTVNRQMKRYNVPCLAFINK 610
I +DTPGH+ F R GV+ QT+ + ++ +VP + + K
Sbjct: 222 ITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVEAIKHIQSADVPVVVALTK 281
Query: 611 LDR 619
DR
Sbjct: 282 SDR 284
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -3
Query: 96 VILKYYIINNSNFIITVQWIFRLYNC 19
V+L Y +I++ N ++++ W+FR C
Sbjct: 31 VLLIYLVIHSQNELVSMSWLFRSTIC 56
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 170 QKYSSHVKYAEHKPLENIRNIGISAHIDSGKTTLTERIL 286
++YSS+ Y P +R IGI+ SGKT++ + I+
Sbjct: 6 ERYSSNPTY--EPPWRKVRFIGIAGPSGSGKTSVAQLIV 42
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 128 LKNTKKSSVFQIELQKYSSHVKYAEHKPLENIRNI-GISA 244
L+ T+K S ++K +KYA ++ L N+R GISA
Sbjct: 274 LQQTRKESKLWSFIKKVFHDIKYANYRLLHNLRAFPGISA 313
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 522 HNTNIAPXKTXNALXXXTVKXTCP--GVSIMLMLCSFQIVYVAADCIVIPL 376
H N+ + L ++K C + IML +CS Q+ +V ++PL
Sbjct: 224 HERNLCSIEKQTTLKNSSLKELCTEEDIVIMLEICSSQLPFVEQYMPILPL 274
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 162 LSYRNIHHMSNMQNTNHWKIFEILVYQLT*TLERQHSLNVFCSILDE*TKCTRLKVKTML 341
+SY N+ + ++N E+LV ++ ++ + NV + +C R+ V+T L
Sbjct: 50 ISY-NVPPLIVLRNKTIRNSIEVLVEEMFRDIQMRQQTNVLVA------QCPRMIVETQL 102
Query: 342 VLLWTQWSWNVKEELQYSL 398
+ L+ +V EEL+ S+
Sbjct: 103 IGLFQSNYTSVAEELEQSI 121
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +2
Query: 104 YAFRLINALKNTKKSSVFQIELQKYSSHV---KYAEHKPLENIRNIGISAHIDSGKTT 268
YAF ++ K S+F E+ K H + H L N+ + D+ TT
Sbjct: 1220 YAFSKCPIVEKNSKKSIFSCEITKVEFHTAVPSSSHHDVLMEENNVHLDLTYDANYTT 1277
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 138 QKNRVYFKLSYRNIHHMSNMQNTNHWKIFEILVYQLT*TLERQHSLNVFCSI 293
Q NR+ Y ++ H+S+ ++W IL Y + +R++ L CSI
Sbjct: 408 QDNRLNIIQGYLDLVHLSDQDQYDNWFTSTILTYLVIDNDQRKYLL---CSI 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,507
Number of Sequences: 5004
Number of extensions: 52562
Number of successful extensions: 181
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -