Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_B05
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     98   6e-21
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)              62   4e-10
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   6e-09
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    56   3e-08
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               40   0.002
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 37   0.012
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              37   0.012
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                32   0.35 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   4.4  
SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0)                    28   7.6  
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)                      28   7.6  
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              28   7.6  

>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
 Frame = +2

Query: 224 RNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKG-KDNVGAVMDSMELERQRGITIQSA 400
           R  GI +H D+GKTTLTE++L + G I +   VK  K   GA  D ME+ERQRGI++ ++
Sbjct: 11  RTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKGATSDFMEIERQRGISVATS 70

Query: 401 ATYTIWKEHNINIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLTVNRQMKRY 580
                +++  INI+DTPGH  F     R                GV+ QT  +    +  
Sbjct: 71  VLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCRMR 130

Query: 581 NVPCLAFINKLDR 619
           N+P + FINK+DR
Sbjct: 131 NIPMIVFINKMDR 143


>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
          Length = 926

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +2

Query: 536 VQSQTLTVNRQMKRYNVPCLAFINKLDRLXAN 631
           +QSQTLTVNRQMKRYNVPC+AFINKLDR   N
Sbjct: 633 IQSQTLTVNRQMKRYNVPCIAFINKLDRAKLN 664



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
 Frame = +2

Query: 320 VKGKDNVGAVMDSMELERQRGITIQSAATYTI---WKEHNINII 442
           VKGKDNVGA MDSMELERQRGITIQS  T T+    K +N+  I
Sbjct: 610 VKGKDNVGATMDSMELERQRGITIQS-QTLTVNRQMKRYNVPCI 652


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 29/63 (46%), Positives = 42/63 (66%)
 Frame = +2

Query: 209  PLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGIT 388
            PLE +RN  I AH+D GK+TL +R+L  TG I      K  DN   V+D +++ER+RGIT
Sbjct: 1937 PLERVRNFSIVAHVDHGKSTLADRLLEVTGTIS-----KSSDN-KQVLDKLQVERERGIT 1990

Query: 389  IQS 397
            +++
Sbjct: 1991 VKA 1993


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
 Frame = +2

Query: 218 NIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQS 397
           NIRN+ + AH+D GK+TLT+ ++   G I        K       D+ + E+ R ITI+S
Sbjct: 17  NIRNMSVIAHVDHGKSTLTDSLVSKAGII-----AAAKAGETRFTDTRKDEQDRCITIKS 71

Query: 398 AATYTIW----------------KEHN--INIIDTPGHVXFTVXXXRXXXXXXXXXXXXC 523
            A    +                KE    IN+ID+PGHV F+                  
Sbjct: 72  TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131

Query: 524 SVXGVQSQTLTVNRQMKRYNVPCLAFINKLDR 619
            V GV  QT TV RQ     +  + F+NK+DR
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 163


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +2

Query: 365 LERQRGITIQSAATYTIWK-EHNINIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQ 541
           +E + G   Q    Y++   +  I  +DTPGH  FT    R             +   V 
Sbjct: 117 IEGESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVM 176

Query: 542 SQTLTVNRQMKRYNVPCLAFINKLDRLXANP 634
            QT       +   VP +  INK+D+  ANP
Sbjct: 177 PQTKEAISHAQAAGVPIIFAINKIDKPNANP 207


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = +2

Query: 431 INIIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLTVNRQMKRYNVPCLAFINK 610
           I  IDTPGH  F     R             +  GV++QT+   R      VP +  INK
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVPLIVAINK 137

Query: 611 LDRLXAN 631
           +D+   N
Sbjct: 138 IDKPKKN 144


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 323 KGKDNVGAVMDSMELERQRGITIQSAATYTIWKEHNINIIDTPGHVXF 466
           KG      V+D ++ ER+RGITI  A       ++ + +ID PGH  F
Sbjct: 3   KGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDF 50


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 437 IIDTPGHVXFTVXXXRXXXXXXXXXXXXCSVXGVQSQTLTVNRQMKRYNVPCLAFINKLD 616
           IIDTPGH  F+    R              + G++ QT+     +K+   P +  +NK+D
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKKRKTPFVVALNKVD 741

Query: 617 RL 622
           RL
Sbjct: 742 RL 743


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 209 PLENIR-NIGISAHIDSGKTTLTERILFYTGRIDQ 310
           P E I  NI +  H+DSGK+T T  +++  G ID+
Sbjct: 2   PKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 36


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 227 NIGISAHIDSGKTTLTERI 283
           NIG+  H+DSGKT+L + +
Sbjct: 37  NIGVLGHVDSGKTSLAKAL 55


>SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 400 SRLYCNSSLTFQLH*VHNSTNIVFTFNLVHLVYSSSIEQNTFSECCLSRVYVS*YTNISN 221
           S  YC+   +F L+   N+TN      LVHL+   ++ +   +   LS + V  +   +N
Sbjct: 219 SAFYCSGECSFPLNANMNATNHAIVQTLVHLMNPKTVPKPCCAPTELSPISVLYFDQDNN 278

Query: 220 I 218
           +
Sbjct: 279 V 279


>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
          Length = 410

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 126 RLKIQKNRVYFKLSY-RNIHHMSNMQNTNHWKIFEILVYQLT*TLERQH 269
           RL +++ R++ K S  RN++H+ N Q   ++++ E  V  +   +   H
Sbjct: 85  RLSLKQLRIFRKFSMGRNMYHLQNNQMYRNFRLNEFFVLPVVLAVNTSH 133


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 527 VXGVQSQTLTVNRQMKRYNV-PCLAFINKLDRL 622
           V GV  QT  V RQ    N+ PCL  +NK+DRL
Sbjct: 41  VEGVSPQTHVVLRQAWLENIRPCLV-LNKIDRL 72



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 527 VXGVQSQTLTVNRQMKRYNV-PCLAFINKLDRL 622
           V GV  QT  V RQ    N+ PCL  +NK+DRL
Sbjct: 111 VEGVSPQTHVVLRQAWLENIRPCLV-LNKIDRL 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,465,841
Number of Sequences: 59808
Number of extensions: 372347
Number of successful extensions: 720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)