Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A23
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    30   0.32 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      30   0.32 
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.0  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   9.0  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  

>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 416 ESNNLARILQTYYETSHHPSLIWACVPMLCSTTYXXCTEDDEQXKAWNEPWYWWSK 583
           ++N+L R L    +T   P  ++  +   C      C  DD+    WN   +W SK
Sbjct: 511 KTNDLVRSLDENLKTKSGPEKLYLIMARYC----LRCVYDDKMDSLWNSRSFWVSK 562


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 332 RHXDYLNEELSYCXGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 499
           RH D +N+ L +  G+G+P I    +  I+  E  NL +++   +  S+  S+     P+
Sbjct: 99  RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156

Query: 500 LCSTTYXXCTEDD 538
           + S      T++D
Sbjct: 157 IKSDENLSFTDED 169


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 91  EYIITADLQTCLTEALQCSYSFIV-SPIIH 177
           E+I   +L T L E L+C Y  I  +P +H
Sbjct: 395 EFISNTNLPTILPEILECFYDNITYTPFVH 424


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 494 VHMPILETDGGSFHNKFGEFWLNCCSLSRVL 402
           V +PIL   G SFH   G  W      SR+L
Sbjct: 856 VKVPILSLRGVSFHRISGNSWQYKTLASRIL 886


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 139 QCSYSFIVSPIIHPRFR 189
           QC +SF+ +P+ HP  +
Sbjct: 158 QCKFSFLFAPMCHPTLK 174


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 506 YIA*VHMPILETDGGSFHNKFGEF 435
           Y+  +H PI  TDG   H  +G F
Sbjct: 90  YLITIHDPICTTDGNLEHALYGSF 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,596
Number of Sequences: 5004
Number of extensions: 50900
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)