Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A21
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 4   SC*IKNGEPCWF 39
           +C ++NG+PC+F
Sbjct: 426 ACGLRNGDPCFF 437


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 4   SC*IKNGEPCWF 39
           +C ++NG+PC+F
Sbjct: 426 ACGLRNGDPCFF 437


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 4   SC*IKNGEPCWF 39
           +C ++NG+PC+F
Sbjct: 426 ACGLRNGDPCFF 437


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 4   SC*IKNGEPCWF 39
           +C ++NG+PC+F
Sbjct: 426 ACGLRNGDPCFF 437


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = -3

Query: 122 VFHYFHHCQSIALNIVGSSLHFQER 48
           +++  H CQ+++  ++G+ L    R
Sbjct: 265 LYYLSHVCQNVSTEVIGNILRLMHR 289


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 444 ESSG*FLCIVNHN 406
           E SG +LC+VN++
Sbjct: 300 EDSGKYLCVVNNS 312


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = -2

Query: 291 DSSKPPHHVQLVFLXIHGVVMLWKWEAVGNLQTVLN 184
           + +  P H + +F+  H    LW  + +  L ++ N
Sbjct: 42  EQNNQPVHDEHLFIVTHQAYELWFKQIIYELDSIRN 77


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = -2

Query: 291 DSSKPPHHVQLVFLXIHGVVMLWKWEAVGNLQTVLN 184
           + +  P H + +F+  H    LW  + +  L ++ N
Sbjct: 42  EQNNQPVHDEHLFIVTHQAYELWFKQIIYELDSIRN 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,012
Number of Sequences: 336
Number of extensions: 2413
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)