Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A21
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    76   4e-15
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.0  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    27   2.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   3.1  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.1  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
 Frame = +1

Query: 268 MMRRLRRVNVDHFHVGWYXSAHVGNFXXXXXXXX-QYHYXTSIEESVVVIYDTKKSARGF 444
           M+ RL+ +     HVGWY  A+V +F         QY Y  +   S+  +YD  +S+ G 
Sbjct: 91  MLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGT 150

Query: 445 LTLKAYRLTPQAIAMYXEGDYTPEALRNLXIGYENLFIEVPIVIRNSPLTNIMISELT 618
           L ++AY+LTP+ +A + E  +T  +L +  +   N+  E+PIVI NS L   ++  L+
Sbjct: 151 LYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLATCLLHSLS 208


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 270  HVQLVFLXIHGVVMLWKWEAVGNLQTVLND 181
            +++ VFL IH ++  W+WE V  +  ++ D
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 181 VVENRLEITNCFPFPKHD----DTMDXEEYQLDMMRRLRRVNV 297
           + +NRLE  N F FP  D      +   EY   M R+L  +NV
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV 49


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 391 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYXEGDYTPEALRNLXIGY 543
           + + +VV YD K  +  F  L+A   TP+      E   TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPE-----IEKQSTPEILKDVDVDF 782


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 199 EITNCFPFPKHDDTMDXEEYQLDMMRRLRRVNV 297
           ++T  +  P H +  +  +++LD  R  RR+N+
Sbjct: 368 DLTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 508  CNRLXCT*Q*PEV---SNDRPSKSRILWLISL 422
            CN + C  Q   +   SN +P  +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,435
Number of Sequences: 5004
Number of extensions: 42472
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)