Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A21
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...   112   2e-25

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score =  112 bits (270), Expect = 2e-25
 Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 4/149 (2%)
 Frame = +1

Query: 196 LEITNCFPFPKHDDT----MDXEEYQLDMMRRLRRVNVDHFHVGWYXSAHVGNFXXXXXX 363
           LE+TNCFPFP  +D      D   YQL+MMR LR VNVD+  VGWY S  +G+F      
Sbjct: 70  LEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELI 129

Query: 364 XXQYHYXTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYXEGDYTPEALRNLXIGY 543
               +Y  +I   V ++YD  +S +G L LKA +LT   + +Y     T E LR   + +
Sbjct: 130 ETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSW 189

Query: 544 ENLFIEVPIVIRNSPLTNIMISELTXMIP 630
            ++F E+PI + NS L +  ++EL    P
Sbjct: 190 VDIFEEIPIKVSNSALVSAFMTELEPESP 218



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +3

Query: 81  VQCDGLAVMKIVKHCHE 131
           VQ +GLAV+KI+KHC E
Sbjct: 35  VQMEGLAVLKIIKHCEE 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,990
Number of Sequences: 37544
Number of extensions: 270388
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)