Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A21
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   5e-18
SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)               28   7.5  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    28   7.5  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
 Frame = +1

Query: 181 VVENRLEITNCFPFPKH----DDTMDXEEYQLDMMRRLRRVNVDHFHVGWYXSAHVGNFX 348
           + +NRLEITNCFPFP +    D+  D   YQ+++MRRLR VN+DH HVGWY S ++G++ 
Sbjct: 50  IQDNRLEITNCFPFPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWYQSTYLGSYI 109

Query: 349 XXXXXXXQYHYXTSIEES 402
                  QY Y  SIE++
Sbjct: 110 NRTLLDSQYSYQKSIEDA 127



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 25/71 (35%), Positives = 48/71 (67%)
 Frame = +1

Query: 418 DTKKSARGFLTLKAYRLTPQAIAMYXEGDYTPEALRNLXIGYENLFIEVPIVIRNSPLTN 597
           D  ++++G LTLKA+RL+ + + +Y +G+++ + L    I + ++F E+P+VI+NS L N
Sbjct: 195 DPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISFHSMFQEIPLVIKNSSLMN 254

Query: 598 IMISELTXMIP 630
           +++ EL    P
Sbjct: 255 VLLCELDENTP 265



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 81  VQCDGLAVMKIVKHCHEXSCSNMEVAQG 164
           VQ DGL V+KI+KHC E   S  ++ QG
Sbjct: 18  VQVDGLTVLKIIKHCEEEGSSG-DLVQG 44


>SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 451 LKAYRLTPQAIAMYXEGDYTPEALRNLXIGYENLFIE 561
           LKAYR  PQA A+    D+  +    L +  +N F E
Sbjct: 16  LKAYRKAPQAAAIQLMSDHGSQLRSKLLVTIDNFFFE 52


>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
          Length = 520

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 304 NDQH*LFEASSSCPTGIPXHPWCRHAL 224
           NDQ  LFE S   P G+P  P  RH +
Sbjct: 440 NDQMMLFERSFIWPYGLPRRPDTRHVI 466


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 223 PKHDDTMDXEEYQLDMMRRLRRVNVDHFHVGW 318
           PK DD    EEY+  M  R +R +V+H H  W
Sbjct: 153 PKWDD-FSVEEYKARMNYRQQRRSVEHRHEPW 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,912
Number of Sequences: 59808
Number of extensions: 317358
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)