Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A21
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...   104   6e-23
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    29   2.1  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score =  104 bits (249), Expect = 6e-23
 Identities = 55/156 (35%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
 Frame = +1

Query: 187 ENRLEITNCFPFPKHDDTMDXE-----EYQ-------LDMMRRLRRVNVDHFHVGWYXSA 330
           ++RLEITNCFP  +++  MD +     +Y+       LDM+R+ R +N+D+  VG+Y S 
Sbjct: 57  DSRLEITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSH 116

Query: 331 HVGNFXXXXXXXXQYHYXTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYXEGDYT 510
             G           + Y     E+VV+IYD  K+ +G L+L+A+RL+  A+ +  + D+ 
Sbjct: 117 QFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWR 176

Query: 511 PEALRNLXIGYENLFIEVPIVIRNSPLTNIMISELT 618
           PE ++   + Y+N+F E+PI+I++S L N+++SEL+
Sbjct: 177 PELVKAAGLTYQNMFEELPIIIKSSYLNNVLMSELS 212


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 196 LEITNCFPFP---KHDDTMDXEEYQLDMMRRLRRVNVDHFHVGWY 321
           +++TNCF  P    +DD    +++   M+  L++ + +   VGW+
Sbjct: 50  IQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWF 94


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +1

Query: 385 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYXEGDYTPEALRNLXIGYENLFI 558
           T+I ES    I+ T+ S    LTL + + TP A IA   E + TP+   ++ + ++   +
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534

Query: 559 EVPIVIRNSPLTNIMISELTXMIPEQEGS 645
            V ++     + NI   ++   +    GS
Sbjct: 535 PVSMMSTTVNVENIKGEQIPVNVFFDSGS 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,164,908
Number of Sequences: 27780
Number of extensions: 241459
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)