Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A21
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10840.1 68414.m01246 eukaryotic translation initiation facto...   117   8e-27
At1g10840.2 68414.m01245 eukaryotic translation initiation facto...    88   4e-18
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    28   4.6  
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    28   4.6  
At2g32260.1 68415.m03943 cholinephosphate cytidylyltransferase, ...    28   6.1  
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ...    27   8.1  
At1g11330.1 68414.m01301 S-locus lectin protein kinase family pr...    27   8.1  

>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 337

 Score =  117 bits (281), Expect = 8e-27
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
 Frame = +1

Query: 196 LEITNCFPFPKHDDTMDXE----EYQLDMMRRLRRVNVDHFHVGWYXSAHVGNFXXXXXX 363
           LE+TNCFPFP  DD  + E     YQL+MMR LR VNVD+  VGWY S  +G++      
Sbjct: 60  LEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELI 119

Query: 364 XXQYHYXTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYXEGDYTPEALRNLXIGY 543
               +Y  +I+  V +IYD  K+  G L LKA +L+   + +Y  G++T E LR     +
Sbjct: 120 ETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSW 179

Query: 544 ENLFIEVPIVIRNSPLTNIMISELTXMIPEQEG 642
            ++F E+PI + NS L +  ++EL    P  +G
Sbjct: 180 MDIFEEIPIKVSNSALVSAFMTELETDTPVSQG 212



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +3

Query: 81  VQCDGLAVMKIVKHCHEXS 137
           VQ +GLAV+KI+KHC E S
Sbjct: 25  VQIEGLAVLKIIKHCKEFS 43


>At1g10840.2 68414.m01245 eukaryotic translation initiation factor 3
           subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
           SP|Q9C5Z2 Eukaryotic translation initiation factor 3
           subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 250

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 45/125 (36%), Positives = 69/125 (55%)
 Frame = +1

Query: 268 MMRRLRRVNVDHFHVGWYXSAHVGNFXXXXXXXXQYHYXTSIEESVVVIYDTKKSARGFL 447
           MMR LR VNVD+  VGWY S  +G++          +Y  +I+  V +IYD  K+  G L
Sbjct: 1   MMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVL 60

Query: 448 TLKAYRLTPQAIAMYXEGDYTPEALRNLXIGYENLFIEVPIVIRNSPLTNIMISELTXMI 627
            LKA +L+   + +Y  G++T E LR     + ++F E+PI + NS L +  ++EL    
Sbjct: 61  ALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDT 120

Query: 628 PEQEG 642
           P  +G
Sbjct: 121 PVSQG 125


>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +1

Query: 196 LEITNCFPFPKHDDTMDXEEYQLD------MMRRLRRVNVDHFHVGWY 321
           +++TN +  P  +D  D   + LD      M    +R+N     VGWY
Sbjct: 55  VDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWY 102


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +1

Query: 196 LEITNCFPFPKHDDTMDXEEYQLD------MMRRLRRVNVDHFHVGWY 321
           +++TN +  P  +D  D   + LD      M    +R+N     VGWY
Sbjct: 55  VDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWY 102


>At2g32260.1 68415.m03943 cholinephosphate cytidylyltransferase,
           putative / phosphorylcholine transferase, putative /
           CTP:phosphocholine cytidylyltransferase, putative strong
           similarity to CTP:phosphocholine cytidylyltransferase
           [Brassica napus] GI:1418125; contains Pfam profile
           PF01467: Cytidylyltransferase
          Length = 332

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +1

Query: 412 IYD-TKKSARGFLTLKAYRLTPQAIAMYXEGDYTPEALRNLXIGYENLFIEVPIVIRNSP 588
           +Y+  KK  R   T +   ++   I M    DY    +RNL  GY    + V  V     
Sbjct: 142 VYEFVKKVGRFKETQRTEGISTSDIIMRIVKDYNQYVMRNLDRGYSREDLGVSFVKEKRL 201

Query: 589 LTNIMISELTXMIPEQE 639
             N+ + +L   + EQ+
Sbjct: 202 RVNMRLKKLQERVKEQQ 218


>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
           thaliana] GI:17225050
          Length = 664

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 405 CCDLRYKEISQRILDFEGLSFDTSGYC 485
           CCD  YKEI   +L  +   FD   +C
Sbjct: 511 CCDACYKEIDGYLLSCDTCDFDLDLHC 537


>At1g11330.1 68414.m01301 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 840

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -1

Query: 475 EVSNDRPSKSRILWLIS 425
           EV+NDRP+ S ++W+++
Sbjct: 778 EVANDRPNVSNVIWMLT 794


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,370,657
Number of Sequences: 28952
Number of extensions: 221561
Number of successful extensions: 426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)