Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A20
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16) 32 0.35
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 31 1.1
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08) 29 2.5
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 29 2.5
SB_15431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027) 29 3.3
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015) 28 5.7
SB_13702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 353 GNYPNXGDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXH 469
GNYP H + HY+ + Y +H+ Q + +S H
Sbjct: 940 GNYPESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHH 978
>SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)
Length = 408
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 428 GFCKCVSHNGQYCHHNXGLLY 366
G C CV+ G +CHH GLLY
Sbjct: 95 GRCSCVAGIGGFCHHVIGLLY 115
>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 356 NYPNXGDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXHRGHYQNXG 493
NY N G+ +DN D+Y+ Y N+++ N+ N+ + +Y N G
Sbjct: 210 NYDNNGNNDSNDNNDNYD--NYDNNDNNDNNN--NNDNNDNYDNNG 251
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 371 GDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXHRGH 478
GD YDD D+Y+ Y N N + + + +GH
Sbjct: 22 GDDDYDDKNDNYDDGDYDNDNGDRNDDGDSHDDQGH 57
>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
Length = 1555
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = +2
Query: 365 NXGDXHYDDNTD-----HYERHTYRNHNSPQRNSSLNSXHRGHYQNX-GGGQRQILPYLQ 526
N D HY+ NTD + R+ +N+N+ N + + + + G +
Sbjct: 1456 NNNDTHYNKNTDDNNNNSFVRYVNKNNNNIHHNKNTDDNNNNSFVKLCQGRSTTTITIFT 1515
Query: 527 QTRTLETQISN-IKCYDNNKSQAYHINSMGD 616
T+T T I+ + Y NN + H N D
Sbjct: 1516 ITKTPMTTITTALSRYVNNNNNDIHHNKNTD 1546
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = +2
Query: 362 PNXGDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXHR--GHY--QNXGGGQRQILPYLQQ 529
PN H D+T H + YR N+ + + ++ HR Y QN R P Q
Sbjct: 272 PNTDSAHRTDSTQHRQCAPYRPPNTDSAHHTDSTQHRQCAPYRPQNTDSAHRTDHP-TQT 330
Query: 530 TRTLETQISNIKCY--DNNKSQAYHINSMGDVDHR 628
RT++T + + D+ + A+ +S HR
Sbjct: 331 VRTVQTLPNTDSAHRTDSTQHSAHRTDSTQHSAHR 365
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +2
Query: 362 PNXGDXHYDDNTDHYERHTYRNH-NSPQRNSSLNSXHRGHYQNXGGGQRQILPY----LQ 526
PN H+ D+T H + +YR + R S Y RQ PY Q
Sbjct: 592 PNTDSAHHTDSTQHRQCASYRLYPTQTVRTVQTLSSTDSAYPTDSTQHRQCAPYRLYPAQ 651
Query: 527 QTRTLET 547
RTL+T
Sbjct: 652 TVRTLQT 658
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Frame = +2
Query: 362 PNXGDXHYDDNTDHYERHTYRNH-----NSPQRNSSLNSXHRGHYQNXGGGQRQILPY-L 523
PN H D+T H + YR H + Q S +S HR H RQ PY L
Sbjct: 738 PNTDSAHRTDSTQHRQCAPYRLHPAQTVRTVQTLPSTDSAHRTHSTQ----HRQCAPYRL 793
Query: 524 QQTRTL 541
T+T+
Sbjct: 794 YPTQTV 799
>SB_15431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +2
Query: 374 DXHYDDNTDHYERH-----TYRNHNSPQRNSSLNSXHRGHYQN---XGGGQRQILPYLQQ 529
D HY DN+D E H +R +S +SSL Y++ G G+ Y
Sbjct: 10 DSHYSDNSDILESHRPYRDRFRTLSSESSSSSLLDYDPAIYRSAAFSGRGEPDKRRYRSY 69
Query: 530 TRTLETQISNIKCYDNNKSQAYHINSMGDVDHRIVANNSLA 652
R + + ++N+ N S+A H S + + + SL+
Sbjct: 70 QRGMGS-LTNLYEASNANSKASHQKSATTIPRHVEFDTSLS 109
>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
Length = 292
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +2
Query: 365 NXGDXHY----DDNTDHYERHTYRNHNSPQRNSSLNSX-HRGHYQNXGGGQRQILPYLQQ 529
N + HY D+N +H+ + N++ NS++NS H++ YL
Sbjct: 215 NDNNNHYRNSNDNNNNHFRKSNDNNNHYRNNNSNINSSDSNNHFRKRNDNNNH---YLNS 271
Query: 530 TRTLETQIS 556
++ TQ+S
Sbjct: 272 KMSVPTQLS 280
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 350 FGNYPNXGDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXHRGHY 481
F Y +Y DN +H+ R + HN +S N H G+Y
Sbjct: 556 FDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSK-NRRHAGYY 598
>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
Length = 504
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 356 NYPNXGDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXHRGH---YQNXGGGQRQ 508
N N + ++N ++ +TY N+NS N++ N+ + + Y N +Q
Sbjct: 434 NNNNSSSSNNNNNNNNNNNNTYNNNNSSNNNNNNNTYNNNNNNTYNNNNNNYKQ 487
>SB_13702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 398 DHYERHTYRNHNSPQRNSSLNSXHRGH 478
D+Y H + NHN Q+ + + HR H
Sbjct: 148 DYYHHHCHSNHNHHQQQNYRHIPHRRH 174
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 356 NYPNXGDXHYDDNTDHYERHTYRNHNSPQRNSSLNSXHRGHYQNXG 493
NY N G+ +DN D+ + + N N +++ N+ + +Y N G
Sbjct: 344 NYDNNGNNDNNDNYDNNDNYD-NNDNYNNNDNNDNNDNNDNYDNNG 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,260,756
Number of Sequences: 59808
Number of extensions: 290810
Number of successful extensions: 939
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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