Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A20
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70681-5|CAE17703.1| 231|Caenorhabditis elegans Hypothetical pr... 31 0.94
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 1.2
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 1.2
Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical pr... 28 5.0
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 6.6
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 6.6
AF068721-2|AAC19262.1| 396|Caenorhabditis elegans Hypothetical ... 28 6.6
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 28 6.6
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 6.6
Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid tr... 27 8.7
AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid tr... 27 8.7
AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid tr... 27 8.7
AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein. 27 8.7
>Z70681-5|CAE17703.1| 231|Caenorhabditis elegans Hypothetical
protein C30F2.5 protein.
Length = 231
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 500 QRQILPYLQQTRTLETQISNIKCYDNNKSQAYHINSMGD---VDHRIVANNS 646
Q ++ L+ +TQ+ I+C +NNK INS + ++ IVA++S
Sbjct: 52 QNHLINILEHESASQTQLQAIRCDNNNKYDTDSINSESEITVIEREIVASSS 103
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 383 YDDNTDHYERHTYRNHNSPQRNSSLNSXHRGHYQNXGGG 499
Y+D+ +HY+RH Y+ +S SS H +Y GG
Sbjct: 223 YEDDRNHYDRHDYQAPSS-YGYSSRGGGHSDYYGGDRGG 260
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 383 YDDNTDHYERHTYRNHNSPQRNSSLNSXHRGHYQNXGGG 499
Y+D+ +HY+RH Y+ +S SS H +Y GG
Sbjct: 243 YEDDRNHYDRHDYQAPSS-YGYSSRGGGHSDYYGGDRGG 280
>Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical
protein C06B3.10 protein.
Length = 341
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 545 FQVFLFVGGMEVSAFGLLLYFGNDLYV 465
F+ FLF S+FGL+LYFG ++
Sbjct: 197 FRGFLFQSTFITSSFGLILYFGTKCHL 223
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 426 TITVLSAIAPLILXIEVITKIXEEAKGRYFHTSNKQEHLKLKFQILN 566
T+ V+ I ++L + I + K HT +KQ+ + ++F+I N
Sbjct: 735 TLGVILCIPAILLIVISIGLLFIPVKRETLHTDSKQDDIFIEFEIFN 781
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 426 TITVLSAIAPLILXIEVITKIXEEAKGRYFHTSNKQEHLKLKFQILN 566
T+ V+ I ++L + I + K HT +KQ+ + ++F+I N
Sbjct: 735 TLGVILCIPAILLIVISIGLLFIPVKRETLHTDSKQDDIFIEFEIFN 781
>AF068721-2|AAC19262.1| 396|Caenorhabditis elegans Hypothetical
protein ZK1055.4 protein.
Length = 396
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 509 ILPYLQQTRTLETQISNIKCYDNNKSQAYH 598
IL L+QT+ + IS +KCY K Q YH
Sbjct: 93 ILRSLEQTKYYDIAISTVKCY--AKIQGYH 120
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 426 TITVLSAIAPLILXIEVITKIXEEAKGRYFHTSNKQEHLKLKFQILN 566
T+ V+ I ++L + I + K HT +KQ+ + ++F+I N
Sbjct: 735 TLGVILCIPAILLIVISIGLLFIPVKRETLHTDSKQDDIFIEFEIFN 781
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 426 TITVLSAIAPLILXIEVITKIXEEAKGRYFHTSNKQEHLKLKFQILN 566
T+ V+ I ++L + I + K HT +KQ+ + ++F+I N
Sbjct: 735 TLGVILCIPAILLIVISIGLLFIPVKRETLHTDSKQDDIFIEFEIFN 781
>Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical
protein T22H6.7 protein.
Length = 195
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 359 YPNXGDXHYDDNTDHYERHTYRNHNSP---QRNSSLNSXHRGHYQ 484
Y N + Y+DN + + YR +P NS+ NS + YQ
Sbjct: 114 YNNGNNMRYNDNNGYNTNNGYRGQPTPGYGNSNSNFNSNQQYSYQ 158
>AF003144-7|AAV58876.1| 278|Caenorhabditis elegans Amino acid
transporter protein5, isoform c protein.
Length = 278
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 184 IEGVKTYLRKTDTLLMICRKNF-YSIRFL 101
IEG+K Y D L+ C+K F YS+ FL
Sbjct: 114 IEGLKQYYEIDDALVPTCQKLFAYSLLFL 142
>AF003144-6|AAV58875.1| 521|Caenorhabditis elegans Amino acid
transporter protein5, isoform b protein.
Length = 521
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 184 IEGVKTYLRKTDTLLMICRKNF-YSIRFL 101
IEG+K Y D L+ C+K F YS+ FL
Sbjct: 114 IEGLKQYYEIDDALVPTCQKLFAYSLLFL 142
>AF003144-5|AAV58874.1| 537|Caenorhabditis elegans Amino acid
transporter protein5, isoform a protein.
Length = 537
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 184 IEGVKTYLRKTDTLLMICRKNF-YSIRFL 101
IEG+K Y D L+ C+K F YS+ FL
Sbjct: 114 IEGLKQYYEIDDALVPTCQKLFAYSLLFL 142
>AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein.
Length = 195
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 359 YPNXGDXHYDDNTDHYERHTYRNHNSP---QRNSSLNSXHRGHYQ 484
Y N + Y+DN + + YR +P NS+ NS + YQ
Sbjct: 114 YNNGNNMRYNDNNGYNTNNGYRGQPTPGYGNSNSNFNSNQQYSYQ 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,815
Number of Sequences: 27780
Number of extensions: 221430
Number of successful extensions: 654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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