Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A20
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11810.1 68414.m01357 F-box family protein contains Pfam PF00...    29   2.7  
At2g39680.1 68415.m04868 expressed protein                             28   4.7  
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami...    27   8.2  

>At1g11810.1 68414.m01357 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; EST gb|AA605362 comes
           from this gene
          Length = 377

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 518 YLQQTRTLETQISNIKCYDNNKSQAYHINSMGDVDHRIVANNSLA 652
           YL +TR ++ + S  + Y N  S A+  +S  + +H+I+ NNS++
Sbjct: 123 YLGETRLIQNR-SLFESYQNFCSYAFGYDSSKNRNHKILRNNSVS 166


>At2g39680.1 68415.m04868 expressed protein 
          Length = 84

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 136 ICRKNFYSIRFLNDHTRLITLVF 68
           IC  +FY + +LN H  L+ +VF
Sbjct: 52  ICISHFYHLEYLNYHLNLLNIVF 74


>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
           protein similar to SP|Q9URQ3 tRNA-specific adenosine
           deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
           deaminase subunit TAD3) {Saccharomyces cerevisiae};
           contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 432

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 548 EFQVFLFVGGMEVSAFGLLLYFGNDLYV*N*GSYCAEDCYGFCK 417
           E  +++FV    V+ F LL  FGND  +   G +  E+    CK
Sbjct: 144 EQTIYVFVYSATVNDF-LLFAFGNDSNIDGIGGFSEEETQSICK 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,968
Number of Sequences: 28952
Number of extensions: 197976
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)