Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A12
(652 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q2F657 Cluster: Ribonucleic acid binding protein S1; n=... 188 8e-47
UniRef50_UPI00015B5A05 Cluster: PREDICTED: similar to CG32705-PA... 77 4e-13
UniRef50_Q9VHC0 Cluster: CG16788-PA; n=2; Sophophora|Rep: CG1678... 71 2e-11
UniRef50_Q15287 Cluster: RNA-binding protein with serine-rich do... 69 7e-11
UniRef50_UPI0000F1D93D Cluster: PREDICTED: similar to RNA bindin... 64 3e-09
UniRef50_Q7Q1Y8 Cluster: ENSANGP00000020915; n=1; Anopheles gamb... 62 8e-09
UniRef50_Q21155 Cluster: Rnp (Rrm rna binding domain) containing... 49 1e-04
UniRef50_Q0IGP7 Cluster: SD20656p; n=6; Drosophila melanogaster|... 49 1e-04
UniRef50_A7F1A0 Cluster: Putative uncharacterized protein; n=1; ... 47 5e-04
UniRef50_Q54I26 Cluster: Putative uncharacterized protein; n=1; ... 42 0.013
UniRef50_Q2KGN9 Cluster: Putative uncharacterized protein; n=3; ... 42 0.013
UniRef50_Q0V1N4 Cluster: Putative uncharacterized protein; n=2; ... 42 0.017
UniRef50_Q7NHK5 Cluster: RNA-binding protein; n=10; cellular org... 40 0.039
UniRef50_Q44560 Cluster: Putative RNA-binding protein rbpA; n=4;... 40 0.039
UniRef50_Q2PIY9 Cluster: Predicted protein; n=3; Aspergillus|Rep... 40 0.052
UniRef50_P73557 Cluster: RNA-binding protein; n=2; Chroococcales... 40 0.068
UniRef50_Q44554 Cluster: Putative RNA-binding protein rbpB; n=41... 39 0.090
UniRef50_Q7U7Q8 Cluster: PutativeRNA-binding protein RbpD; n=9; ... 39 0.12
UniRef50_Q7S0E6 Cluster: Putative uncharacterized protein NCU099... 39 0.12
UniRef50_A0D0L0 Cluster: Chromosome undetermined scaffold_33, wh... 38 0.21
UniRef50_A0DJK7 Cluster: Chromosome undetermined scaffold_53, wh... 38 0.28
UniRef50_UPI000023EAEC Cluster: hypothetical protein FG08536.1; ... 37 0.36
UniRef50_A4V6K2 Cluster: PRM10 protein; n=1; Dugesia japonica|Re... 37 0.36
UniRef50_Q9WX39 Cluster: Putative RNA-binding protein rbpF; n=10... 37 0.36
UniRef50_A5JZY0 Cluster: RNA binding protein, putative; n=2; Euk... 36 0.84
UniRef50_Q6LFN8 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_A5K4W9 Cluster: RNA binding protein, putative; n=1; Pla... 36 1.1
UniRef50_Q6FQ16 Cluster: Candida glabrata strain CBS138 chromoso... 36 1.1
UniRef50_Q1MTR2 Cluster: RNA-binding protein; n=1; Schizosacchar... 36 1.1
UniRef50_UPI0000D5659E Cluster: PREDICTED: similar to CG4760-PB,... 35 1.5
UniRef50_Q9SEE9 Cluster: Arginine/serine-rich protein; n=9; Magn... 35 1.5
UniRef50_Q5KJM2 Cluster: RNA binding protein, putative; n=2; Fil... 35 1.5
UniRef50_Q80W27 Cluster: Coiled-coil domain containing 144B; n=5... 35 1.9
UniRef50_Q8DIY8 Cluster: RNA binding protein; n=3; Cyanobacteria... 35 1.9
UniRef50_Q9SAB3 Cluster: F25C20.21 protein; n=39; Magnoliophyta|... 35 1.9
UniRef50_A1DGG0 Cluster: Small subunit of nuclear cap-binding pr... 35 1.9
UniRef50_Q9FGT1 Cluster: Genomic DNA, chromosome 5, TAC clone:K2... 34 2.6
UniRef50_Q5KCA9 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_P42568 Cluster: Protein AF-9; n=59; Euteleostomi|Rep: P... 34 2.6
UniRef50_Q8II54 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A2R7K8 Cluster: Function: human SRp75 can complement a ... 34 3.4
UniRef50_Q57014 Cluster: Putative RNA-binding protein rbpA; n=70... 34 3.4
UniRef50_Q9HEQ9 Cluster: Single-stranded TG1-3 DNA-binding prote... 33 4.5
UniRef50_P19684 Cluster: 33 kDa ribonucleoprotein, chloroplast p... 33 4.5
UniRef50_Q96SB8 Cluster: Structural maintenance of chromosomes p... 33 5.9
UniRef50_Q04047 Cluster: Protein no-on-transient A; n=61; Dipter... 33 5.9
UniRef50_UPI0000E47947 Cluster: PREDICTED: similar to GA10247-PA... 33 7.8
UniRef50_Q83CD7 Cluster: Nucleic acid binding domain protein; n=... 33 7.8
UniRef50_Q9SN69 Cluster: Putative uncharacterized protein F24J7.... 33 7.8
UniRef50_O04319 Cluster: Poly(A)-binding protein isolog (Poly(A)... 33 7.8
UniRef50_Q54NB8 Cluster: RNA-binding region-containing protein; ... 33 7.8
UniRef50_A0EG16 Cluster: Chromosome undetermined scaffold_94, wh... 33 7.8
UniRef50_Q6BPA1 Cluster: Debaryomyces hansenii chromosome E of s... 33 7.8
UniRef50_Q08920 Cluster: Nuclear cap-binding protein subunit 2; ... 33 7.8
UniRef50_Q14103 Cluster: Heterogeneous nuclear ribonucleoprotein... 33 7.8
>UniRef50_Q2F657 Cluster: Ribonucleic acid binding protein S1; n=3;
Coelomata|Rep: Ribonucleic acid binding protein S1 -
Bombyx mori (Silk moth)
Length = 293
Score = 188 bits (459), Expect = 8e-47
Identities = 98/190 (51%), Positives = 100/190 (52%)
Frame = +1
Query: 82 MARNKSPLPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 261
MARNKSPLPAAE
Sbjct: 1 MARNKSPLPAAEKEKKKPKESKKKKGDSGSSSSDSSGSSSSSSSRSSSRSSSSSSGSSSR 60
Query: 262 XXXXXXXXXXXXXXXXXXXXXXXTISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLS 441
TISPNKSPLKDRRDADREKIR RSPTGEKKKSVLPLS
Sbjct: 61 SSSSSSSSSSSSSNNGRSRPKKKTISPNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLS 120
Query: 442 NDKAKIKEKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
NDKAKIKEKQ TRIH+GRLTLNVTRDHIHEIFSTYGTVKS+EFP
Sbjct: 121 NDKAKIKEKQERSPGRKKRERSPPPRPTRIHMGRLTLNVTRDHIHEIFSTYGTVKSMEFP 180
Query: 622 MDRLHPHNGR 651
MDRLHPH GR
Sbjct: 181 MDRLHPHKGR 190
>UniRef50_UPI00015B5A05 Cluster: PREDICTED: similar to CG32705-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG32705-PA - Nasonia vitripennis
Length = 742
Score = 77.0 bits (181), Expect = 4e-13
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Frame = +1
Query: 358 KDR-RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXXTRIH 534
+DR RD DRE+ R R EKKK K K + + T+IH
Sbjct: 509 RDRDRDRDREREREREREREKKKPNAVPEKPKPKPRSR-TPSPRRKRRERSPIPRPTKIH 567
Query: 535 IGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGR 651
IG LT NVT+DHI EIFSTYG +K I+FP+D+LHP + R
Sbjct: 568 IGHLTRNVTKDHITEIFSTYGNIKMIDFPIDKLHPAHCR 606
>UniRef50_Q9VHC0 Cluster: CG16788-PA; n=2; Sophophora|Rep:
CG16788-PA - Drosophila melanogaster (Fruit fly)
Length = 374
Score = 70.9 bits (166), Expect = 2e-11
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGR 651
RIH+GRLT NVT+DH+ EIFS++G VK++EFP+DR HP+ GR
Sbjct: 220 RIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGR 261
>UniRef50_Q15287 Cluster: RNA-binding protein with serine-rich
domain 1; n=47; Eumetazoa|Rep: RNA-binding protein with
serine-rich domain 1 - Homo sapiens (Human)
Length = 305
Score = 69.3 bits (162), Expect = 7e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
>UniRef50_UPI0000F1D93D Cluster: PREDICTED: similar to RNA binding
protein S1, serine-rich domain; n=1; Danio rerio|Rep:
PREDICTED: similar to RNA binding protein S1,
serine-rich domain - Danio rerio
Length = 363
Score = 64.1 bits (149), Expect = 3e-09
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++++GRLT NVT+DHI EIF+TYG +K I+ P DRLHP+
Sbjct: 260 TKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPN 299
>UniRef50_Q7Q1Y8 Cluster: ENSANGP00000020915; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000020915 - Anopheles gambiae
str. PEST
Length = 304
Score = 62.5 bits (145), Expect = 8e-09
Identities = 33/91 (36%), Positives = 47/91 (51%)
Frame = +1
Query: 367 RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXXTRIHIGRL 546
RD D+E + R+P+ +K S ++ + + RIHIGRL
Sbjct: 119 RDNDKENKQARAPSVDK-------SIKDSRSRRSRSGSSKRKRRERSVTPRPVRIHIGRL 171
Query: 547 TLNVTRDHIHEIFSTYGTVKSIEFPMDRLHP 639
T NV RDHI EIFS+YG + ++FPM+R P
Sbjct: 172 TRNVNRDHIVEIFSSYGEISKVDFPMERFQP 202
>UniRef50_Q21155 Cluster: Rnp (Rrm rna binding domain) containing
protein 5; n=2; Caenorhabditis|Rep: Rnp (Rrm rna binding
domain) containing protein 5 - Caenorhabditis elegans
Length = 289
Score = 48.8 bits (111), Expect = 1e-04
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +1
Query: 352 PLKDRRDADREKIRXRSPTGEKKKSVLPLSNDKAKIK--EKQXXXXXXXXXXXXXXXXXT 525
P R D DR SP ++ S P D+ ++
Sbjct: 74 PRGARADRDRPMRPSPSPPRRRRPSPSPPRRDRRDRSGSRQRRRASPRRSPAARSASPAK 133
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
R+ I L+ NV + H+ EIFS YG +K+++ P DR H H
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNH 172
>UniRef50_Q0IGP7 Cluster: SD20656p; n=6; Drosophila
melanogaster|Rep: SD20656p - Drosophila melanogaster
(Fruit fly)
Length = 708
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGR 651
R+HI LT VT++HI EIF +G + +++FPMDR GR
Sbjct: 536 RLHIKGLTRQVTKEHITEIFGHFGALTAVDFPMDRFQGRQGR 577
>UniRef50_A7F1A0 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 338
Score = 46.8 bits (106), Expect = 5e-04
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T++ I +LT NVT DH+ EIF +YG +K ++ PM+R
Sbjct: 105 TKVVIEKLTKNVTEDHLREIFGSYGEIKDLDVPMNR 140
>UniRef50_Q54I26 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 266
Score = 41.9 bits (94), Expect = 0.013
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I + RLT NV +DH+ EIF +G++K I+F D+
Sbjct: 4 IRVDRLTPNVNKDHLQEIFENFGSIKDIDFLWDK 37
>UniRef50_Q2KGN9 Cluster: Putative uncharacterized protein; n=3;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea 70-15
Length = 375
Score = 41.9 bits (94), Expect = 0.013
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
I I RLT NVT DH+ +IF YG ++ ++ P++R + G
Sbjct: 145 IVIERLTKNVTEDHLRDIFGQYGEIRDLDLPINRQGTNRG 184
>UniRef50_Q0V1N4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Phaeosphaeria nodorum (Septoria nodorum)
Length = 324
Score = 41.5 bits (93), Expect = 0.017
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIR-XRSPTGEK--KKSVLPLSNDKAKIKEKQXXXXXXXXXX 501
T SP+++ + R R +R RSP+ + ++S P S +++ +
Sbjct: 23 TRSPSRAHSRSPRPGSRSPVRNSRSPSPRRNGRRSYTPDSRSRSR---GRSYTRSPTPRD 79
Query: 502 XXXXXXXTRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I + LT NV +HI EIF YG +K + PM+
Sbjct: 80 GSPAPRSAKIVVEALTRNVKEEHIREIFGKYGVIKDLRMPMN 121
>UniRef50_Q7NHK5 Cluster: RNA-binding protein; n=10; cellular
organisms|Rep: RNA-binding protein - Gloeobacter
violaceus
Length = 123
Score = 40.3 bits (90), Expect = 0.039
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+ +G L +VT I E FS YGTVKS++ P DR
Sbjct: 3 VFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDR 36
>UniRef50_Q44560 Cluster: Putative RNA-binding protein rbpA; n=4;
Bacteria|Rep: Putative RNA-binding protein rbpA -
Anabaena sp. (strain PCC 7120)
Length = 102
Score = 40.3 bits (90), Expect = 0.039
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I++G L+ VT+D + +F+ YGTVK ++ P DR
Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDR 36
>UniRef50_Q2PIY9 Cluster: Predicted protein; n=3; Aspergillus|Rep:
Predicted protein - Aspergillus oryzae
Length = 343
Score = 39.9 bits (89), Expect = 0.052
Identities = 14/36 (38%), Positives = 27/36 (75%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
++I + +LT NVT H+ EIF ++G ++S++ PM++
Sbjct: 110 SKIVVEKLTKNVTESHLREIFGSFGGIESLDLPMNK 145
>UniRef50_P73557 Cluster: RNA-binding protein; n=2;
Chroococcales|Rep: RNA-binding protein - Synechocystis
sp. (strain PCC 6803)
Length = 83
Score = 39.5 bits (88), Expect = 0.068
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I++G L+ T D + +FS YGTVK ++ P DR
Sbjct: 3 IYVGNLSYQATEDDVLTVFSEYGTVKRVQLPTDR 36
>UniRef50_Q44554 Cluster: Putative RNA-binding protein rbpB; n=41;
Bacteria|Rep: Putative RNA-binding protein rbpB -
Anabaena sp. (strain PCC 7120)
Length = 103
Score = 39.1 bits (87), Expect = 0.090
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I++G L+ +VT + ++ +F+ YG+VK ++ P+DR
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDR 36
>UniRef50_Q7U7Q8 Cluster: PutativeRNA-binding protein RbpD; n=9;
Cyanobacteria|Rep: PutativeRNA-binding protein RbpD -
Synechococcus sp. (strain WH8102)
Length = 96
Score = 38.7 bits (86), Expect = 0.12
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I+IG L+ ++H+ ++FS YG VK+ P+DR
Sbjct: 3 IYIGNLSFQAEQEHLFDLFSEYGEVKNCSLPLDR 36
>UniRef50_Q7S0E6 Cluster: Putative uncharacterized protein
NCU09901.1; n=2; Sordariales|Rep: Putative
uncharacterized protein NCU09901.1 - Neurospora crassa
Length = 331
Score = 38.7 bits (86), Expect = 0.12
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T+I + RLT N+ +H+ EIF +G ++ ++ P++R
Sbjct: 109 TKIVVERLTKNINENHLREIFGQFGEIEDLDLPLNR 144
>UniRef50_A0D0L0 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=3; Eukaryota|Rep: Chromosome
undetermined scaffold_33, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 430
Score = 37.9 bits (84), Expect = 0.21
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +1
Query: 400 SPTGEKKKSVLPLS-----NDKAKIKEKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTR 564
S + E+KK V L+ + K++ + K+ + + ++ NVT+
Sbjct: 13 SSSSEEKKRVKDLNQKKSRSQKSRERSKEKSKEKKNKEKTKEKKVKNLLLVQNISRNVTQ 72
Query: 565 DHIHEIFSTYGTVKSIEFPMD 627
D +HEIFSTYG + ++E D
Sbjct: 73 DVLHEIFSTYGKLTNVEMQFD 93
>UniRef50_A0DJK7 Cluster: Chromosome undetermined scaffold_53, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_53,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 786
Score = 37.5 bits (83), Expect = 0.28
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
++HIG L L +T + +H +FS YG +K ++
Sbjct: 95 KLHIGNLPLQITEETLHRVFSKYGQIKEVK 124
>UniRef50_UPI000023EAEC Cluster: hypothetical protein FG08536.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG08536.1 - Gibberella zeae PH-1
Length = 397
Score = 37.1 bits (82), Expect = 0.36
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHN 645
I + RL+ N+ H+ EIF +G +K ++ PM+R N
Sbjct: 140 IVVERLSKNINESHLQEIFGQFGRIKDLDLPMNRTFATN 178
>UniRef50_A4V6K2 Cluster: PRM10 protein; n=1; Dugesia japonica|Rep:
PRM10 protein - Dugesia japonica (Planarian)
Length = 325
Score = 37.1 bits (82), Expect = 0.36
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ VT + I E FS YG+V+S++ P D
Sbjct: 156 KIFVGGLSPEVTEEQIKEYFSQYGSVESVDLPFD 189
>UniRef50_Q9WX39 Cluster: Putative RNA-binding protein rbpF; n=10;
Bacteria|Rep: Putative RNA-binding protein rbpF -
Anabaena sp. (strain PCC 7120)
Length = 105
Score = 37.1 bits (82), Expect = 0.36
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I++G L+ VT++ I +F+ YG+VK + P DR
Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDR 36
>UniRef50_A5JZY0 Cluster: RNA binding protein, putative; n=2;
Eukaryota|Rep: RNA binding protein, putative - Plasmodium
vivax
Length = 1127
Score = 35.9 bits (79), Expect = 0.84
Identities = 16/74 (21%), Positives = 34/74 (45%)
Frame = +1
Query: 427 VLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTRDHIHEIFSTYGTVK 606
VL LS + ++K+K+ ++ + L VT++ + ++FS +G +K
Sbjct: 954 VLELSLSRNRVKKKKNKNNEEKEVVKEKKKITKKLLVKNLAFQVTKEELRKLFSAFGNIK 1013
Query: 607 SIEFPMDRLHPHNG 648
S+ P + + G
Sbjct: 1014 SVRIPKNAYNRSRG 1027
>UniRef50_Q6LFN8 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 646
Score = 35.5 bits (78), Expect = 1.1
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 401 HQQEKKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHD 520
HQ +KK + Y++ ++K+ K RND D ++N H++H+
Sbjct: 447 HQIKKKNKISYIHSKKQIKIYKERNDNND-SNDNHHNNHN 485
>UniRef50_A5K4W9 Cluster: RNA binding protein, putative; n=1;
Plasmodium vivax|Rep: RNA binding protein, putative -
Plasmodium vivax
Length = 156
Score = 35.5 bits (78), Expect = 1.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+++ LT NV+ DH+ EIF+ +G +K I +D
Sbjct: 6 LYVYNLTKNVSADHLKEIFTNFGNLKDIHISLD 38
>UniRef50_Q6FQ16 Cluster: Candida glabrata strain CBS138 chromosome
I complete sequence; n=1; Candida glabrata|Rep: Candida
glabrata strain CBS138 chromosome I complete sequence -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 211
Score = 35.5 bits (78), Expect = 1.1
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 633
I++G + VT++ ++E+F+ G VK +++P D++
Sbjct: 8 IYVGNIDTKVTKELLYELFTQVGQVKKVKYPKDKI 42
>UniRef50_Q1MTR2 Cluster: RNA-binding protein; n=1;
Schizosaccharomyces pombe|Rep: RNA-binding protein -
Schizosaccharomyces pombe (Fission yeast)
Length = 243
Score = 35.5 bits (78), Expect = 1.1
Identities = 22/86 (25%), Positives = 32/86 (37%)
Frame = +1
Query: 367 RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXXTRIHIGRL 546
R + R+ RSP+G S+ + I + L
Sbjct: 47 RSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSSLSRSPEEPLRTILVENL 106
Query: 547 TLNVTRDHIHEIFSTYGTVKSIEFPM 624
T NVT++HI EIF YG + I P+
Sbjct: 107 TRNVTKEHIAEIFGIYGLIDHIFMPI 132
>UniRef50_UPI0000D5659E Cluster: PREDICTED: similar to CG4760-PB,
isoform B; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG4760-PB, isoform B - Tribolium castaneum
Length = 242
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
RI +G ++ N T + ++FS+YGTVK+ + DR
Sbjct: 56 RIFVGGISANTTEGELLQLFSSYGTVKAAKIIQDR 90
>UniRef50_Q9SEE9 Cluster: Arginine/serine-rich protein; n=9;
Magnoliophyta|Rep: Arginine/serine-rich protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 414
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+H+ L+ NV H+ EIF +G V +E MDR
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDR 133
>UniRef50_Q5KJM2 Cluster: RNA binding protein, putative; n=2;
Filobasidiella neoformans|Rep: RNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 393
Score = 35.1 bits (77), Expect = 1.5
Identities = 27/93 (29%), Positives = 40/93 (43%)
Frame = +1
Query: 346 KSPLKDRRDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXXT 525
KS DR A R RSP+ + +S LP KA +++
Sbjct: 11 KSLTPDRSPARSYLSRSRSPSRSRSRSPLPR---KASLRDADMDAPGDGLYKV------- 60
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPM 624
I + L+ NV + H+ EIFS YG + I+ P+
Sbjct: 61 -IVVSGLSKNVMKGHLDEIFSEYGRITGIDLPL 92
>UniRef50_Q80W27 Cluster: Coiled-coil domain containing 144B; n=5;
Murinae|Rep: Coiled-coil domain containing 144B - Mus
musculus (Mouse)
Length = 520
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 311 VQGLRKKQFHQTRVHLKIVVMLIGRRLXIDHQQEKKKNLCYLYQMTKLKLRKNRN 475
V GLRKK R L+ L R + ++EK+KN+ ++Y K +LR+ +
Sbjct: 80 VNGLRKKLADAAREQLQQGQELCNVRFTLKQEEEKRKNVVWVYDKMKEQLREKED 134
>UniRef50_Q8DIY8 Cluster: RNA binding protein; n=3;
Cyanobacteria|Rep: RNA binding protein - Synechococcus
elongatus (Thermosynechococcus elongatus)
Length = 90
Score = 34.7 bits (76), Expect = 1.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
++IG L+ T + + E+F YG ++ I P+DR
Sbjct: 3 LYIGNLSYEATENDLREVFEKYGAIRRIVLPVDR 36
>UniRef50_Q9SAB3 Cluster: F25C20.21 protein; n=39;
Magnoliophyta|Rep: F25C20.21 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 405
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/73 (20%), Positives = 29/73 (39%)
Frame = +1
Query: 403 PTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTRDHIHEI 582
P + + P ++ K ++ T + +G L +VT DH+ +
Sbjct: 221 PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNV 280
Query: 583 FSTYGTVKSIEFP 621
FS YG + ++ P
Sbjct: 281 FSQYGEIVHVKIP 293
>UniRef50_A1DGG0 Cluster: Small subunit of nuclear cap-binding
protein complex; n=8; Pezizomycotina|Rep: Small subunit
of nuclear cap-binding protein complex - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 196
Score = 34.7 bits (76), Expect = 1.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T +++G L+ T + IHE+FS G +K + +DR
Sbjct: 67 TTLYVGNLSFYTTEEQIHELFSKCGEIKRLVMGLDR 102
>UniRef50_Q9FGT1 Cluster: Genomic DNA, chromosome 5, TAC
clone:K21L19; n=2; Arabidopsis thaliana|Rep: Genomic
DNA, chromosome 5, TAC clone:K21L19 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 748
Score = 34.3 bits (75), Expect = 2.6
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEF 618
R+H+G L +V RD + +IFS GTV ++EF
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEF 41
>UniRef50_Q5KCA9 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 881
Score = 34.3 bits (75), Expect = 2.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R+HIG L +T H+ + FS +GTVK +E
Sbjct: 10 RLHIGGLKPEITTIHLKDRFSIFGTVKDVE 39
>UniRef50_P42568 Cluster: Protein AF-9; n=59; Euteleostomi|Rep:
Protein AF-9 - Homo sapiens (Human)
Length = 568
Score = 34.3 bits (75), Expect = 2.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLSND 447
T S +K +KD+ K++ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>UniRef50_Q8II54 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 170
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEF 618
I+I LT NV+ +H+ EIF +GT+K +++
Sbjct: 6 IYIYNLTRNVSINHLKEIFMNFGTLKDVQY 35
>UniRef50_A2R7K8 Cluster: Function: human SRp75 can complement a
splicing-deficient extract; n=14; Pezizomycotina|Rep:
Function: human SRp75 can complement a
splicing-deficient extract - Aspergillus niger
Length = 367
Score = 33.9 bits (74), Expect = 3.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPM 624
TR+++G L NVT+ I E FST+G+ K E +
Sbjct: 7 TRLYLGNLPRNVTKQDIEEHFSTHGSGKITEIKL 40
>UniRef50_Q57014 Cluster: Putative RNA-binding protein rbpA; n=70;
cellular organisms|Rep: Putative RNA-binding protein
rbpA - Synechocystis sp. (strain PCC 6803)
Length = 101
Score = 33.9 bits (74), Expect = 3.4
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I++G L+ +V+ + +F+ YG+VK ++ P DR
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDR 36
>UniRef50_Q9HEQ9 Cluster: Single-stranded TG1-3 DNA-binding protein;
n=1; Schizosaccharomyces pombe|Rep: Single-stranded
TG1-3 DNA-binding protein - Schizosaccharomyces pombe
(Fission yeast)
Length = 348
Score = 33.5 bits (73), Expect = 4.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 633
R+ +GRL+ + + I +F T GTV+ + P R+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRV 80
>UniRef50_P19684 Cluster: 33 kDa ribonucleoprotein, chloroplast
precursor; n=8; core eudicotyledons|Rep: 33 kDa
ribonucleoprotein, chloroplast precursor - Nicotiana
sylvestris (Wood tobacco)
Length = 324
Score = 33.5 bits (73), Expect = 4.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 633
R+++G L ++T + EIF+ GTV ++E DR+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRV 150
>UniRef50_Q96SB8 Cluster: Structural maintenance of chromosomes
protein 6; n=20; Tetrapoda|Rep: Structural maintenance
of chromosomes protein 6 - Homo sapiens (Human)
Length = 1091
Score = 33.1 bits (72), Expect = 5.9
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 395 IDHQQEKKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 544
I H +E K Y+ K+K+RKN ++++++ EN H ++TL+D
Sbjct: 696 IKHNEELLKRCQLHYKELKMKIRKNISEIREL--ENIEEHQSVDIATLED 743
>UniRef50_Q04047 Cluster: Protein no-on-transient A; n=61;
Diptera|Rep: Protein no-on-transient A - Drosophila
melanogaster (Fruit fly)
Length = 700
Score = 33.1 bits (72), Expect = 5.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
R+++G LT ++T D + E+F YG + I +D+
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFSNLDK 337
>UniRef50_UPI0000E47947 Cluster: PREDICTED: similar to GA10247-PA;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to GA10247-PA - Strongylocentrotus purpuratus
Length = 519
Score = 32.7 bits (71), Expect = 7.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ IGRLT + T++ + +IFS YG V + P
Sbjct: 206 KLFIGRLTSDTTKEDLFDIFSKYGEVVDVFIP 237
>UniRef50_Q83CD7 Cluster: Nucleic acid binding domain protein; n=3;
Coxiella burnetii|Rep: Nucleic acid binding domain
protein - Coxiella burnetii
Length = 103
Score = 32.7 bits (71), Expect = 7.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+I++G L+ +VT D + F YG ++ + MDR
Sbjct: 5 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDR 39
>UniRef50_Q9SN69 Cluster: Putative uncharacterized protein
F24J7.162; n=2; Arabidopsis thaliana|Rep: Putative
uncharacterized protein F24J7.162 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 772
Score = 32.7 bits (71), Expect = 7.8
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
T++H+ + T+ + ++FS +G +KS+ P + + G
Sbjct: 658 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAG 699
>UniRef50_O04319 Cluster: Poly(A)-binding protein isolog (Poly(A)
binding protein-like); n=1; Arabidopsis thaliana|Rep:
Poly(A)-binding protein isolog (Poly(A) binding
protein-like) - Arabidopsis thaliana (Mouse-ear cress)
Length = 537
Score = 32.7 bits (71), Expect = 7.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
T +++ L VT D +H +FS YGTV S+ D + G
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
>UniRef50_Q54NB8 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 1035
Score = 32.7 bits (71), Expect = 7.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKS 609
+RI+IG + NVT D + IFS +G V S
Sbjct: 769 SRIYIGSINWNVTEDQVRSIFSQFGRVIS 797
>UniRef50_A0EG16 Cluster: Chromosome undetermined scaffold_94, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_94,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 144
Score = 32.7 bits (71), Expect = 7.8
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+++G + +VT + I +F T+G +KS++ P+D
Sbjct: 9 VYLGGIPEDVTVEQIKHLFITFGEIKSVDLPID 41
>UniRef50_Q6BPA1 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=2;
Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 639
Score = 32.7 bits (71), Expect = 7.8
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 395 IDHQQEKKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVS 532
ID++++K N + +LKL +N ND+ + + AH + D+L++
Sbjct: 359 IDNEEDKYINSLLKISLVQLKLNENMNDILNDKKMYAHANSDKLIN 404
>UniRef50_Q08920 Cluster: Nuclear cap-binding protein subunit 2;
n=9; Ascomycota|Rep: Nuclear cap-binding protein subunit
2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 208
Score = 32.7 bits (71), Expect = 7.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
I++G L+ + + I+E+FS GT+K I +DR
Sbjct: 48 IYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDR 81
>UniRef50_Q14103 Cluster: Heterogeneous nuclear ribonucleoprotein
D0; n=123; Deuterostomia|Rep: Heterogeneous nuclear
ribonucleoprotein D0 - Homo sapiens (Human)
Length = 355
Score = 32.7 bits (71), Expect = 7.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,343,497
Number of Sequences: 1657284
Number of extensions: 6922213
Number of successful extensions: 21696
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 20659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21599
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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