Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A12
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 43 2e-04
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 38 0.007
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 32 0.34
10_08_0338 + 16916429-16916650,16916728-16917900 29 2.4
07_01_0911 - 7664498-7664704,7664790-7664858,7666441-7666569 29 2.4
01_07_0120 + 41185884-41186127,41187228-41187310,41188596-411886... 29 2.4
11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677 29 3.2
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 29 3.2
06_01_0900 + 6926600-6927202 29 4.2
05_04_0092 + 17851085-17851346,17852778-17852860,17853891-178539... 29 4.2
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 29 4.2
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 28 7.4
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 7.4
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 27 9.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 9.8
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 633
T +H+ L+ NV DH+ EIF YG V ++E MDR+
Sbjct: 136 TVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRV 172
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 633
+HI L+ NV H+ EIF +G V ++E MDR+
Sbjct: 895 LHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRM 929
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T I +G L NVT D + ++F+ YG V ++ P+ +
Sbjct: 524 TTIFVGGLDPNVTEDVLKQVFAPYGEVVHVKIPVGK 559
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+I +G L N+T D + F TYG V + D+
Sbjct: 129 KIFVGGLPSNLTEDEFRQYFQTYGVVTDVVVMYDQ 163
>07_01_0911 - 7664498-7664704,7664790-7664858,7666441-7666569
Length = 134
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T++HI L VT D + E+FS G +K D+
Sbjct: 26 TKLHISNLDPGVTVDDVQELFSEIGELKRYSVNYDK 61
>01_07_0120 +
41185884-41186127,41187228-41187310,41188596-41188647,
41188729-41188854,41188967-41189049,41189308-41189490,
41189901-41190237,41190607-41190750,41190854-41190939,
41191069-41191113
Length = 460
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
++ IG L NVT + ++FS YG +K ++
Sbjct: 129 KLFIGMLPKNVTDTELTDLFSKYGNIKDLQ 158
>11_01_0002 + 3386-3541,3619-3717,4114-4182,4275-4459,4662-4677
Length = 174
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T++HI L V+ + I E+FS G VK D+
Sbjct: 68 TKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDK 103
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
T++ + + T + ++FS +G +KS+ PM + H G
Sbjct: 781 TKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPM-KFGSHRG 821
>06_01_0900 + 6926600-6927202
Length = 200
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 533 WIRVGRGGGERSRFLRPG 480
W RVG GGGER R+ R G
Sbjct: 52 WHRVGGGGGERRRWWRRG 69
>05_04_0092 +
17851085-17851346,17852778-17852860,17853891-17853942,
17854054-17854179,17854291-17854373,17855127-17855309,
17855731-17855947,17856156-17856299,17856375-17856446,
17857166-17857230,17857517-17857584,17857968-17858007,
17858843-17859013
Length = 521
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
++ IG L NVT + ++FS YG +K ++
Sbjct: 135 KLFIGMLPKNVTDAEMTDLFSQYGNIKDLQ 164
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
TR+++GRL+ + FS YG ++ +E D
Sbjct: 11 TRLYVGRLSSRTRSRDLEYHFSRYGRIREVELKRD 45
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKS 609
+++ L+ N T D + EIF +GT+ S
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITS 247
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
+R+++G ++L + + +FS YG V+ ++
Sbjct: 18 SRLYVGHISLRTRAEDLENLFSRYGRVRFVD 48
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 545 SRPMWIRVGRGGGER 501
+ P W+R+GRGGG R
Sbjct: 319 AHPPWLRMGRGGGAR 333
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
TR+++GRL+ + ++F YG V+ ++
Sbjct: 18 TRLYVGRLSSRTRTRDLEDLFGRYGRVRYVD 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,370
Number of Sequences: 37544
Number of extensions: 184249
Number of successful extensions: 664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -