Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A12
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 50 2e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.27
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 31 0.62
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 2.5
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_53106| Best HMM Match : PLAT (HMM E-Value=0) 28 7.6
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 28 7.6
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T++++ LT NV +DH+ EIFS YG VK+++ P DR
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDR 1192
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
TR+++G L N+T + +F +GTV S++ D
Sbjct: 242 TRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYD 276
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 31.5 bits (68), Expect = 0.62
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Frame = +1
Query: 358 KDR-RDADREKIRXRSPTGEKKKS-VLPLSND---KAKIKEKQXXXXXX---XXXXXXXX 513
+DR RD DR++ R R +K K P D + K+KE +
Sbjct: 478 RDRDRDRDRDRDRGRDRDRDKDKGHERPKDRDERDREKVKEAEPETKNPHIPAVEKDALS 537
Query: 514 XXXTRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
+ I +G L VT+D + IF +GT+ SI+
Sbjct: 538 VCSSTIWVGHLAKIVTQDTLQGIFEEHGTITSID 571
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 565 DHIHEIFSTYGTVKSIEFPMDR 630
D IHE+FS YG +K++ +DR
Sbjct: 307 DDIHELFSDYGEIKNLHVNLDR 328
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSI 612
R+++GRL T D + F +YG ++ I
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGR 651
T + + LT T + + ++F YG + I P DR + H R
Sbjct: 16 TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDR-NTHESR 57
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+++G L ++T +H++F YG V + D+
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDK 45
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 314 QGLRKKQFHQTRVHLKIVV--MLIGRRLXIDHQQEKKKNLCY 433
Q L KK ++ K+VV M I L I QE KKNLC+
Sbjct: 378 QNLAKKYVNRNGAATKVVVGAMYIIHSLNIPATQEFKKNLCW 419
>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 178 CCWSLSHLSFSCFLWVSSSLSQLQAKAIYF*PFSTYYVFIY 56
CC SH++FS F S + A+ F PF Y+++ Y
Sbjct: 808 CCAENSHVAFSEFFQARSHRLTVLNNAVSF-PFVKYFIYEY 847
>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1790
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 533 WIRVGRGGGERSRFLRPGD 477
W+ G G++SR LRPGD
Sbjct: 155 WLDDSHGDGQKSRVLRPGD 173
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R+++G L +V +H+IF YG + ++
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYGHIADVD 291
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVK 606
++ IG L T + + E FSTYG V+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVE 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,673
Number of Sequences: 59808
Number of extensions: 215404
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -