Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A12
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 69 1e-11
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 69 1e-11
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 69 1e-11
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 69 1e-11
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 69 1e-11
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 69 1e-11
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 69 1e-11
L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein. 34 0.38
D16688-1|BAA04090.1| 342|Homo sapiens LTG9/MLLT3 protein protein. 34 0.38
BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or mix... 34 0.38
AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or mix... 34 0.38
AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or mix... 34 0.38
BC039828-1|AAH39828.1| 1091|Homo sapiens structural maintenance ... 33 0.88
AJ310551-1|CAC39248.1| 1091|Homo sapiens SMC6 protein protein. 33 0.88
AC097377-2|AAX88851.1| 1091|Homo sapiens unknown protein. 33 0.88
X03910-1|CAA27544.1| 225|Homo sapiens protein ( Human mRNA for ... 33 1.2
U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein. 33 1.2
M94630-1|AAA35781.1| 328|Homo sapiens DNA-binding protein protein. 33 1.2
D55674-1|BAA09525.1| 355|Homo sapiens heterogeneous nuclear rib... 33 1.2
D55673-1|BAA09524.1| 215|Homo sapiens heterogeneous nuclear rib... 33 1.2
D55672-1|BAA09523.1| 306|Homo sapiens heterogeneous nuclear rib... 33 1.2
D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear rib... 33 1.2
BC026015-1|AAH26015.1| 306|Homo sapiens heterogeneous nuclear r... 33 1.2
BC023977-1|AAH23977.1| 306|Homo sapiens heterogeneous nuclear r... 33 1.2
BC002401-1|AAH02401.1| 355|Homo sapiens heterogeneous nuclear r... 33 1.2
AF039575-1|AAB96683.1| 298|Homo sapiens heterogeneous nuclear r... 33 1.2
AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear r... 33 1.2
AF026126-2|AAC23475.1| 306|Homo sapiens heterogeneous nuclear r... 33 1.2
AF026126-1|AAC23474.1| 355|Homo sapiens heterogeneous nuclear r... 33 1.2
AC124016-1|AAY40913.1| 355|Homo sapiens unknown protein. 33 1.2
U23731-1|AAA70033.1| 414|Homo sapiens TAR DNA-binding protein-4... 32 1.5
EF434182-1|ABO32291.1| 414|Homo sapiens TDP43 splice variant 1 ... 32 1.5
EF434181-1|ABO32290.1| 416|Homo sapiens TDP43 protein. 32 1.5
CR533534-1|CAG38565.1| 414|Homo sapiens TARDBP protein. 32 1.5
BC095435-1|AAH95435.1| 414|Homo sapiens TAR DNA binding protein... 32 1.5
BC071657-1|AAH71657.1| 414|Homo sapiens TARDBP protein protein. 32 1.5
AL109811-2|CAI22099.1| 295|Homo sapiens TAR DNA binding protein... 32 1.5
AL109811-1|CAI22098.1| 414|Homo sapiens TAR DNA binding protein... 32 1.5
AK222754-1|BAD96474.1| 414|Homo sapiens TAR DNA binding protein... 32 2.0
BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein. 31 3.6
BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor, argini... 31 3.6
AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor, argini... 31 3.6
AB209694-1|BAD92931.1| 206|Homo sapiens splicing factor, argini... 31 3.6
U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein. 30 8.2
U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein. 30 8.2
U30828-1|AAA93071.1| 135|Homo sapiens SRp55-2 protein. 30 8.2
BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor, argini... 30 8.2
AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor, argini... 30 8.2
AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich sp... 30 8.2
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 138 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 177
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 84 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 123
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 69.3 bits (162), Expect = 1e-11
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPH 642
T++HIGRLT NVT+DHI EIFSTYG +K I+ P++R+HPH
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200
>L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein.
Length = 568
Score = 34.3 bits (75), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLSND 447
T S +K +KD+ K++ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>D16688-1|BAA04090.1| 342|Homo sapiens LTG9/MLLT3 protein protein.
Length = 342
Score = 34.3 bits (75), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLSND 447
T S +K +KD+ K++ S T EKKKS LP +D
Sbjct: 93 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 131
>BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 34.3 bits (75), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLSND 447
T S +K +KD+ K++ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 34.3 bits (75), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLSND 447
T S +K +KD+ K++ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 34.3 bits (75), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 331 TISPNKSPLKDRRDADREKIRXRSPTGEKKKSVLPLSND 447
T S +K +KD+ K++ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>BC039828-1|AAH39828.1| 1091|Homo sapiens structural maintenance of
chromosomes 6 protein.
Length = 1091
Score = 33.1 bits (72), Expect = 0.88
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 395 IDHQQEKKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 544
I H +E K Y+ K+K+RKN ++++++ EN H ++TL+D
Sbjct: 696 IKHNEELLKRCQLHYKELKMKIRKNISEIREL--ENIEEHQSVDIATLED 743
>AJ310551-1|CAC39248.1| 1091|Homo sapiens SMC6 protein protein.
Length = 1091
Score = 33.1 bits (72), Expect = 0.88
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 395 IDHQQEKKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 544
I H +E K Y+ K+K+RKN ++++++ EN H ++TL+D
Sbjct: 696 IKHNEELLKRCQLHYKELKMKIRKNISEIREL--ENIEEHQSVDIATLED 743
>AC097377-2|AAX88851.1| 1091|Homo sapiens unknown protein.
Length = 1091
Score = 33.1 bits (72), Expect = 0.88
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 395 IDHQQEKKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 544
I H +E K Y+ K+K+RKN ++++++ EN H ++TL+D
Sbjct: 696 IKHNEELLKRCQLHYKELKMKIRKNISEIREL--ENIEEHQSVDIATLED 743
>X03910-1|CAA27544.1| 225|Homo sapiens protein ( Human mRNA for
hnRNP C protein cross-reacting with C1 and C2 hnRNP
core proteins. ).
Length = 225
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 206
>U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein.
Length = 286
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 195
>M94630-1|AAA35781.1| 328|Homo sapiens DNA-binding protein protein.
Length = 328
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 195
>D55674-1|BAA09525.1| 355|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 355
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>D55673-1|BAA09524.1| 215|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 215
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 92 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 125
>D55672-1|BAA09523.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 306
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 267
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 95 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 128
>BC026015-1|AAH26015.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (AU-rich element RNA binding protein
protein.
Length = 306
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>BC023977-1|AAH23977.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (AU-rich element RNA binding protein
protein.
Length = 306
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>BC002401-1|AAH02401.1| 355|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (AU-rich element RNA binding protein
protein.
Length = 355
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>AF039575-1|AAB96683.1| 298|Homo sapiens heterogeneous nuclear
ribonucleoprotein D0B protein.
Length = 298
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 175 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 208
>AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 336
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 197
>AF026126-2|AAC23475.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 306
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>AF026126-1|AAC23474.1| 355|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 355
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>AC124016-1|AAY40913.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 32.7 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
+I +G L+ + + I E F +G V+SIE PMD
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
>U23731-1|AAA70033.1| 414|Homo sapiens TAR DNA-binding protein-43
protein.
Length = 414
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>EF434182-1|ABO32291.1| 414|Homo sapiens TDP43 splice variant 1
protein.
Length = 414
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>EF434181-1|ABO32290.1| 416|Homo sapiens TDP43 protein.
Length = 416
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>CR533534-1|CAG38565.1| 414|Homo sapiens TARDBP protein.
Length = 414
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>BC095435-1|AAH95435.1| 414|Homo sapiens TAR DNA binding protein
protein.
Length = 414
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>BC071657-1|AAH71657.1| 414|Homo sapiens TARDBP protein protein.
Length = 414
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>AL109811-2|CAI22099.1| 295|Homo sapiens TAR DNA binding protein
protein.
Length = 295
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>AL109811-1|CAI22098.1| 414|Homo sapiens TAR DNA binding protein
protein.
Length = 414
Score = 32.3 bits (70), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIP 223
>AK222754-1|BAD96474.1| 414|Homo sapiens TAR DNA binding protein
variant protein.
Length = 414
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
++ +GR T ++T D + E FS YG V + P
Sbjct: 192 KVFVGRCTGDMTEDELREFFSQYGDVMDVFIP 223
>BC112343-1|AAI12344.1| 508|Homo sapiens SFRS12 protein protein.
Length = 508
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 343 NKSPLKDR-RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEK 468
+KSP K R + +R K R RS + +K+K +K ++KEK
Sbjct: 235 SKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEK 277
>BC067770-1|AAH67770.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 343 NKSPLKDR-RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEK 468
+KSP K R + +R K R RS + +K+K +K ++KEK
Sbjct: 235 SKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEK 277
>AF459094-1|AAL67778.1| 508|Homo sapiens splicing factor,
arginine/serine-rich 12 protein.
Length = 508
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 343 NKSPLKDR-RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEK 468
+KSP K R + +R K R RS + +K+K +K ++KEK
Sbjct: 235 SKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEK 277
>AB209694-1|BAD92931.1| 206|Homo sapiens splicing factor,
arginine/serine-rich 12 variant protein.
Length = 206
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 343 NKSPLKDR-RDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEK 468
+KSP K R + +R K R RS + +K+K +K ++KEK
Sbjct: 26 SKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEK 68
>U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein.
Length = 344
Score = 29.9 bits (64), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R++IGRL+ NV I FS YG + ++
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVD 32
>U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein.
Length = 335
Score = 29.9 bits (64), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R++IGRL+ NV I FS YG + ++
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVD 32
>U30828-1|AAA93071.1| 135|Homo sapiens SRp55-2 protein.
Length = 135
Score = 29.9 bits (64), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R++IGRL+ NV I FS YG + ++
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVD 32
>BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 29.9 bits (64), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R++IGRL+ NV I FS YG + ++
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVD 32
>AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 29.9 bits (64), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R++IGRL+ NV I FS YG + ++
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVD 32
>AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich
splicing factor 6 variant protein.
Length = 279
Score = 29.9 bits (64), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
R++IGRL+ NV I FS YG + ++
Sbjct: 37 RVYIGRLSYNVREKDIQRFFSGYGRLLEVD 66
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,685,142
Number of Sequences: 237096
Number of extensions: 1046238
Number of successful extensions: 2883
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2860
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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