Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A12
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.041
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.041
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 34 0.071
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 33 0.12
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 33 0.12
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.22
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.22
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.50
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.50
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 31 0.88
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 31 0.88
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 0.88
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 0.88
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.88
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 30 1.2
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 30 1.2
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 30 1.2
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 30 1.5
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 30 1.5
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 29 2.0
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 2.0
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 29 2.0
At1g52880.1 68414.m05979 no apical meristem (NAM) family protein... 29 2.0
At5g20270.1 68418.m02413 expressed protein contains Pfam domain,... 29 2.7
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 3.5
At2g29850.1 68415.m03625 hypothetical protein 29 3.5
At3g62420.1 68416.m07012 bZIP transcription factor family protei... 28 4.7
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 6.2
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 27 8.2
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 27 8.2
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 27 8.2
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+H+ L+ NV H+ EIF +G V +E MDR
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDR 133
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+H+ L+ NV H+ EIF +G V +E MDR
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDR 133
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEF 618
R+H+G L +V RD + +IFS GTV ++EF
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEF 41
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
T + +G L +VT DH+ +FS YG + ++ P
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP 293
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
T + +G L +VT DH+ +FS YG + ++ P
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP 293
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 32.7 bits (71), Expect = 0.22
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
T++H+ + T+ + ++FS +G +KS+ P + + G
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAG 710
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
T +++ L VT D +H +FS YGTV S+ D + G
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRG 243
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
++ +G L NV+ + +FS YGT+K ++ L G
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKG 150
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG 648
++ +G L NV+ + +FS YGT+K ++ L G
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKG 141
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
T ++IG ++ T + ++E+FS G +K I +D+
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDK 69
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 30.7 bits (66), Expect = 0.88
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+++G L ++T + + +FS YG+V +++ DR
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR 42
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 30.7 bits (66), Expect = 0.88
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
++++G L N++ + +IF +G V+ ++ P+D
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLD 299
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
TR+++GRL+ + +FS YG V+ ++ D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMD 627
TR+++GRL+ + +FS YG V+ ++ D
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
TR+++G L+ T D + E FS YG V DR
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDR 38
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
++ +G L NV+ + +FS YGT+K ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQ 136
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIE 615
++ +G L NV+ + +FS YGT+K ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQ 136
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+++ L N+T + +++IF YG ++ I D+
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDK 54
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.5
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFP 621
T++H+ + T + ++F+ +G +KS+ P
Sbjct: 351 TKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLP 383
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 523 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
TR+H+ L VT + I E+FS G V+ D+
Sbjct: 93 TRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDK 128
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGR 651
+++ L ++T IH +FST+G V + DR H R
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDR-HTRQSR 98
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 529 IHIGRLTLNVTRDHIHEIFSTYGTVKSI 612
+ +GRL+ + T D + E+ S YG +K++
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNL 93
>At1g52880.1 68414.m05979 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM (no apical meristem) GB:CAA63101 from
[Petunia x hybrida]; identical to cDNA NAC domain
protein GI:4325285
Length = 320
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 425 LCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQLV 529
LC +Y+ ++ + L + +N HH HD ++
Sbjct: 171 LCRIYKKNNSTASRHHHHLHHIHLDNDHHRHDMMI 205
>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 332
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 265 MNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLS 116
M +SY + E M Y++N YY WS+ FS F + + SL+
Sbjct: 51 MKRRELMSYCELPEYMKDNEYILN--YYRADWSIRDAFFSVFSFHNESLN 98
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 526 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRL 633
R+++G L +T + +IF GTV ++ D++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKV 152
>At2g29850.1 68415.m03625 hypothetical protein
Length = 284
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 440 QMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLDD 544
Q ++K R N N+LQ V + HH + + T D
Sbjct: 231 QRLEVKYRANSNELQGVIPQQQHHQEQEAMQTQGD 265
>At3g62420.1 68416.m07012 bZIP transcription factor family protein
similar to common plant regulatory factor 6 GI:9650826
from [Petroselinum crispum]
Length = 146
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 346 KSPLKDRRDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEK 468
K + +R A R ++R + G+ V L ND AKI E+
Sbjct: 28 KRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQ 68
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 331 TISPNKSPLKD-----RRDADREKIRXRSPTGEKKKSVLPLSNDKAKIKEK 468
++S +KSP KD RR R + RSP+ +KKKS P + ++K + +
Sbjct: 233 SLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSP-PRAMSRSKSRSR 282
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 544 LTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+T T D ++ +F+ YG V + P DR
Sbjct: 23 ITFRTTADDLYPLFAKYGKVVDVFIPRDR 51
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 544 LTLNVTRDHIHEIFSTYGTVKSIEFPMDR 630
+T T D ++ +F+ YG V + P DR
Sbjct: 23 ITFRTTADDLYPLFAKYGKVVDVFIPRDR 51
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 556 VTRDHIHEIFSTYGTVKSI 612
VT D +H +FS YGTV+ I
Sbjct: 256 VTVDVLHTVFSAYGTVQKI 274
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,112,973
Number of Sequences: 28952
Number of extensions: 158862
Number of successful extensions: 632
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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