Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A11
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 137 1e-33
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 32 0.083
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 29 0.59
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 29 0.59
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.77
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 1.0
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 27 2.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 5.5
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 7.2
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 9.5
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 137 bits (331), Expect = 1e-33
Identities = 73/190 (38%), Positives = 112/190 (58%), Gaps = 3/190 (1%)
Frame = +3
Query: 93 KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 269
K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D ELLQAK ++L TNM DYV ++ L
Sbjct: 14 KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73
Query: 270 --YPEXXTPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPKTLINHLS 443
+ + ++R VL EL EL++ V +L +++ D++ + +D + HL
Sbjct: 74 GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130
Query: 444 TNKEYXFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLSVLWGKLASE 623
+ Y E I +Y+ A+++Y CGNY ++ LY + + N S WGK ASE
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASE 188
Query: 624 ILVQNWDGAL 653
IL +WDGA+
Sbjct: 189 ILTVDWDGAM 198
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 31.9 bits (69), Expect = 0.083
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 593 QIIXVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFK 462
Q++ V W+HHQ C I + F IFGQ I AID ++ K
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAK 368
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 29.1 bits (62), Expect = 0.59
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -2
Query: 518 TFIAIFGQTIHAIDHFNFKXILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 357
TF+ +G I+ D +N L +VY ++ + F+ + ++S+++SQ W
Sbjct: 83 TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -3
Query: 316 TPLRCIIXSGVXXSG*SILLMSVT*SIMLVLLKISNFACRSSDWSYVSFAAKNSSKGNTR 137
T RC+I G SG S+L++ S V + NF+ +S S VSF +++ +
Sbjct: 2511 TKNRCVIFCGPPGSGKSMLMLGTLRSRQDVEVIALNFSISTSSKSVVSFLEQSTVYYRST 2570
Query: 136 CRSRYCP 116
+ CP
Sbjct: 2571 GMTIMCP 2577
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 108 FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 227
F I +YL +L+ P LEF L A E Q + A ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 396 TIETMRDPKTLINHLSTNKEYXFKIEMIDSMYRLAKYRYECGNY 527
T+ T+ D ++ HL+ F + ++M++ ++YRY N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -1
Query: 648 RHPNFVPKFR*PIYP-KEPTNNXCQLATSPVDKSKDMM 538
R FVP P P K P L +P+DK +DMM
Sbjct: 162 RTKKFVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 582 CQLATSPVDKSKDMMLTPHNFHIHSDIW 499
C++ V KS D+ + H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -2
Query: 422 FRIPHGFNCFHYIISLHESQYWLYC---ILKFLQFRKNY--TSPLYNXFRSVXFRIEHSS 258
F +PHG ++ ++ +QY ++ I+ L F+K+ S + + FR+E S
Sbjct: 69 FFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFRVEESR 128
Query: 257 DVSN 246
+V +
Sbjct: 129 NVED 132
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 650 RAIPILYQNFASQFTPKNRQIIXVSWRHHQ 561
RA+ L +NF + KN+++I W Q
Sbjct: 69 RAVSALPENFFDESIAKNKELIEEEWNDFQ 98
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 381 DDVMKTIETMRDPKTLINHLSTNKE---YXFKIEMIDSMYRLAK 503
+DV+K + T+ PK +I L ++ + F I+ ID ++ +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 390 MKTIETMRDPKTLINHLSTNKEYXFKIEMID 482
MKTIE P L + +K Y +E ID
Sbjct: 64 MKTIERAHFPSKLWQRIKLSKNYAKALEQID 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,341
Number of Sequences: 5004
Number of extensions: 48112
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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