Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A11
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 149 1e-36
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 102 3e-22
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 91 9e-19
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 5.6
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 7.5
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 149 bits (362), Expect = 1e-36
Identities = 73/188 (38%), Positives = 121/188 (64%)
Frame = +3
Query: 90 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 269
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY DI + L
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61
Query: 270 YPEXXTPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 449
+ P+ +++RR V+S L+ L +A P++ +Q + ++ +R K H+ +
Sbjct: 62 HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHMLQD 118
Query: 450 KEYXFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLSVLWGKLASEIL 629
+ + E I+++Y+ AK++++CGNY ++A YLY + + + ++ + LS LWGKLA+EIL
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYLYQYRALCTNSERS-LSALWGKLAAEIL 176
Query: 630 VQNWDGAL 653
+QNWD AL
Sbjct: 177 MQNWDVAL 184
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 102 bits (244), Expect = 3e-22
Identities = 61/197 (30%), Positives = 111/197 (56%), Gaps = 9/197 (4%)
Frame = +3
Query: 90 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVTDIR 260
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 261 RMLYPEXX------TPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPK 422
++L+ + P+ +++RR V++ L L P++ ++ + P
Sbjct: 62 KLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPD 113
Query: 423 TLINHLSTNKEYXFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLSVL 602
N ++ + + I+++Y+ AK++++CGNY ++A L+ + + + ++ + LS
Sbjct: 114 KEHNIRMLHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS-LSAQ 172
Query: 603 WGKLASEILVQNWDGAL 653
WGKL++EIL NWD AL
Sbjct: 173 WGKLSAEILNNNWDVAL 189
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 90.6 bits (215), Expect = 9e-19
Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
Frame = +3
Query: 90 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 269
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSR 61
Query: 270 YPEXXTPEXIIQRRGVVLSELQELQDAVXPVLRLMQ-RDDVMKTIETMRDPKTLINHLST 446
Y PE +++RR V+S L L +A+ + + Q D ++T+ + + S
Sbjct: 62 YGTDDVPEDMVKRRAEVVSRLTSLGEAIDNIHQNQQIGPDQIETLYQYAKFQFDCGNYSF 121
Query: 447 NKEYXFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLSVLWGKLASEI 626
+Y L +YR C N S S LWGKLA+EI
Sbjct: 122 AAQY------------LHQYRALCTNIERSLS------------------ALWGKLAAEI 151
Query: 627 LVQNWDGAL 653
L+QNWD AL
Sbjct: 152 LMQNWDVAL 160
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 13 GCWFLPTTCVSIFIRIHENKLST*VTQNLI----*RLK*DSILIGISCFLY*NS*QQRRH 180
GC LP + + F+R+ E+ LST QN+I R S+ +SC L Q H
Sbjct: 108 GCPVLPLSLIQHFLRVCEHWLSTGNNQNIILLHCERGGWPSLAFMLSCLLIFKKLQSAEH 167
Query: 181 MT 186
T
Sbjct: 168 KT 169
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 387 VMKTIETMRDPKTLINHLSTNKEYXFKIEMIDSMYRLAKYR 509
V+ +ET P TL+ L+TNK+Y K SMYR +R
Sbjct: 127 VIDNLETSPVPDTLLWGLATNKKYTTK-----SMYRTLTFR 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,288
Number of Sequences: 37544
Number of extensions: 268350
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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