Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A11
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)                      99   4e-21
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     82   3e-16
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)                  32   0.35 
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   30   1.9  

>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 399

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 53/139 (38%), Positives = 77/139 (55%)
 Frame = +3

Query: 237 IDYVTDIRRMLYPEXXTPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRD 416
           +D+  D+ + LYP+   P  ++++R  V+ EL++LQ    P+            I    D
Sbjct: 6   VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSD 53

Query: 417 PKTLINHLSTNKEYXFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLS 596
           P+              K EM+D +Y+ AK++YECGNY  +A YLYF + +    D N L+
Sbjct: 54  PEFTAQ---------IKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLN 104

Query: 597 VLWGKLASEILVQNWDGAL 653
            LWGKLASEIL+QNWD AL
Sbjct: 105 ALWGKLASEILMQNWDTAL 123


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = +3

Query: 474 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLSVLWGKLASEILVQNWDGAL 653
           M+D +Y+ AK++YECGNY  +A YLYF + +    D N L+ LWGKLASEIL+QNWD AL
Sbjct: 1   MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTNSLNALWGKLASEILMQNWDTAL 60


>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
          Length = 829

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +3

Query: 363 LRLMQRDDVMKTIETMRDPKTLINHLSTNKEYXFKIEMIDSMYRLAKYRYECGNYVESAS 542
           ++L +   V +T  T    + L N L   KEY   +E+    YRL K R   G + E+A 
Sbjct: 712 IKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHPETAR 769

Query: 543 YLYFCQLV 566
            LY   ++
Sbjct: 770 ILYMIGVI 777


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 261 RMLYPEXXTPEXIIQRRGVVLSELQELQDAVXPVLR-LMQRDDVMKTIETMRDPKTLINH 437
           R LYPE       + +  V    + ELQ A+    R L+++   + TI  + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570

Query: 438 LSTNKEY 458
           L  ++ +
Sbjct: 571 LCASEGF 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,626
Number of Sequences: 59808
Number of extensions: 342956
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)