Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A11
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   133   9e-32
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    32   0.41 
Z49068-7|CAA88859.1|  552|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  133 bits (322), Expect = 9e-32
 Identities = 66/190 (34%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
 Frame = +3

Query: 90  SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 269
           S FDLT ++  +LD HL+ PLLEF+  +  YD+  L +   ++L+KTNMID V +     
Sbjct: 2   STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIET---- 57

Query: 270 YPEXXTPEXIIQRRGVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPK---TLINHL 440
           Y     P  I  ++  ++ E  EL+  V  V+ +++  +V + ++  R+      ++ HL
Sbjct: 58  YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117

Query: 441 STNKEYXFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDXNYLSVLWGKLAS 620
           + N  + F ++M+D++++ +K+ YECGNY  ++  LY+ + +++  D NYL+ L+GKLAS
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLAS 175

Query: 621 EILVQNWDGA 650
           EIL+Q W+ A
Sbjct: 176 EILLQEWEHA 185


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 482  IDHFNFKXILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 303
            ++H + K I   C + V ++    H F  +++++ +  S+Y +  I+  LQ+    TS  
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782

Query: 302  YNXFRSVXFRIEHSSDV 252
            YN      F  + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799


>Z49068-7|CAA88859.1|  552|Caenorhabditis elegans Hypothetical
           protein K01C8.8 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 483 SMYRLAKYRYECGNYVESASYLYFCQLVMSPT-DXNYLSVLWGKLASEILVQ 635
           S Y + +YR +  ++  S S+LY  +L   P+   N   V W K   +I+++
Sbjct: 298 STYVIPEYRLDYYDFEGSNSFLYDIRLSQDPSIAGNVAIVFWNKKLKQIILK 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,751
Number of Sequences: 27780
Number of extensions: 263735
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)