Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A10
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 66 3e-12
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 66 3e-12
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 53 3e-08
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 44 3e-05
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 1e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 2e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 3e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.004
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.007
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 35 0.009
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.012
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.020
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.027
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.062
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 32 0.062
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.11
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.11
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.44
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.58
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.58
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.0
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 3.1
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 7.1
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 9.4
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.4
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 9.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 66.5 bits (155), Expect = 3e-12
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXX 408
+LYVG LDPSVTE L LF IG V ++ R+ + YA++ F
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
+N ++ + ++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 589 RIVRD 603
++ D
Sbjct: 198 KVAVD 202
Score = 54.0 bits (124), Expect = 2e-08
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 414
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H +N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 415 KRVVLDKEMKVNWATSPG----------NQPKTDTSNHH---HIFVGDLSPEIETNILRE 555
+ K++ V A Q K + N + ++F+ +L E++ L+
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 556 AFAPFGEISNCRIVRDPQTLKSKGLCF 636
F+ FG I++ +I+ D Q KSKG F
Sbjct: 383 EFSAFGTITSAKIMTDEQG-KSKGFGF 408
Score = 50.8 bits (116), Expect = 2e-07
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGNDP-YAFLEFTCHXXXXXXXXXMN 414
+++ NLDP++ L F G + CK+ + E GN Y F+ F +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 415 KRVVLDKEMKVNWATSPGN-QPKTDT--SNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
++ DK++ V S Q K + +N ++++ +L EI + F FGEI++
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 586 CRIVRDPQTLKSKGLCF 636
+V+D Q K +G F
Sbjct: 290 LSLVKD-QNDKPRGFGF 305
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 66.5 bits (155), Expect = 3e-12
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEFTCHXXXXXXXXX 408
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSM 153
Query: 409 MNKRVVLDKEM-KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEI 579
NK + + K+NWA+ G + K+ ++ + IFVGDLSP + + FA +
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 580 SNCRIVRDPQTLKSKGLCF 636
+ +I+ DPQT S+G F
Sbjct: 214 KSAKIMTDPQTNVSRGYGF 232
Score = 32.7 bits (71), Expect = 0.047
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 30/149 (20%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 405
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 406 XMNKRVVLDKEMKVNWAT--------SPGN---------------QPK---TDTSNHHHI 507
M ++ D+ ++V AT SP N QP DT+N +
Sbjct: 247 EMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANST-V 305
Query: 508 FVGDLSPEIETNILREAFAPFGEISNCRI 594
FVG LS + L+ F FGEI +I
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKI 334
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 53.2 bits (122), Expect = 3e-08
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 390
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 570
+N+ + K ++VN A+ +T ++FVG+L P ++ +L + F+
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRG---VNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 571 GEISNCRIVRDPQTLKSKGLCF 636
G++ V + +SKG F
Sbjct: 123 GQLVKAPQVARDENGRSKGYGF 144
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 43.6 bits (98), Expect = 3e-05
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Frame = +1
Query: 235 KTLYVGNLDPS--VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXX 408
KT+YVGNL P+ + E+ C + G ++ I+ E +FL+ H
Sbjct: 115 KTVYVGNLPPNTPIDEILSCV---RTGPIESAWILPEKNCAFISFLD-PSHATAFFQDAA 170
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 573
+ + + E+KV W + + + ++F+G+L I + +RE PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 574 EISNCRIVRD 603
I +IV +
Sbjct: 231 PIDQIKIVTE 240
Score = 29.1 bits (62), Expect = 0.58
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 5/128 (3%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+T+Y+GN+ T +C + G + + ++E F++ ++
Sbjct: 323 RTVYIGNIHADTTIEEICNAV-RGGLLHNIRYLQEKHICFVTFVD-PVSAFRFFEMSNIH 380
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEI 579
V+ ++ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 381 GLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEI 440
Query: 580 SNCRIVRD 603
R+
Sbjct: 441 EYVNFFRE 448
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 211 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 372
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +1
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
+N + +D+ ++V+ + P Q DT +FVG+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 589 RIVRDPQTLKSKGLCF 636
RIVRDP+T KG +
Sbjct: 300 RIVRDPKTNLGKGFAY 315
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 372
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G L+ E + LR+ F FGE+ +C ++RD T +S+G F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGF 208
Score = 33.9 bits (74), Expect = 0.020
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 1/133 (0%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
+++G L+ T+ L F Q G+V C ++R+ F M+K
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 421 VVLDKEMKVNWATSPGNQ-PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 597
LD ++ P P+ + +FVG + + R F FG + + ++
Sbjct: 225 HHLDGKI-----IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
Query: 598 RDPQTLKSKGLCF 636
D T + +G F
Sbjct: 280 MDKDTGRPRGFGF 292
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 484 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KSKG F
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAF 76
Score = 31.1 bits (67), Expect = 0.14
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEFTCHXXX 390
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 391 XXXXXXMNKRVVLDKEMKVNWATS 462
M +LD+ ++V+ S
Sbjct: 86 VLAVDNMTNVKLLDRLVRVDHVAS 109
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +1
Query: 463 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+R+P T S+G F
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXX 396
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKE 61
Query: 397 XXXXMNKRVVLDKEMKVN 450
MN ++ D+ ++V+
Sbjct: 62 AMENMNYSILCDRCIRVS 79
Score = 31.9 bits (69), Expect = 0.082
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVR 600
+ VG+L+P + ++L AF PFGEI + + R
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHR 39
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 472 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
+P D++ +FVG LS ++ L + F +G I R++ D Q+ +SKG
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKG 305
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 202 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 342
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
Score = 31.9 bits (69), Expect = 0.082
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
+FVG+LS + L AF G+I + R+ DPQ+ + KG
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKG 408
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXXM 411
++VGN+ V+E + +F Q+G VK K++ +P Y F EF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 412 NKRVVLDKEMKVNWATSPGNQPKTDTS 492
N + ++++V + P N P+ + S
Sbjct: 69 NNSELGPRKIRVEF---PSNDPRRNQS 92
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFC 639
+FVG++ ++ + E F G + ++V DP+T KG FC
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFC 53
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
+FV ++SP + + LR F FGE+ + + +P T S GLC CI
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLC-CI 140
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.012
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXX 390
+E +T++V L +T L F Q G V+ +I+R+ + A++EF CH
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF-CHEDS 293
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN----------HHHIFVGDLSPEIET 540
++ + +L + V + N+ + + H + V ++ +
Sbjct: 294 VQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTD 353
Query: 541 NILREAFAPFGEISNCRIVRDPQTLKSKG 627
++ F PFG+I + RD Q +SKG
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRDDQN-RSKG 381
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
+FV L+ + + L + F G + + +IVRD + +SKG+ + C
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFC 289
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 493 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
NH +FVG+L ++ L +AF+ + + ++VRD + K++G F
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGF 74
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.5 bits (73), Expect = 0.027
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
+P + P D N +FV +L I T L E F+ FG I +C + P T SKG
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 634 F 636
F
Sbjct: 466 F 466
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEIS 582
I+VG+L +++ L E F PFG S
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFS 47
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.062
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEFTCHXXXXXXXXXM 411
L+V L+P + L +F + G + C++IR E G+ YAF+EF M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 412 NKRVVLDKEMKVNWATSPGNQPKTDTSN 495
++ D + V+++ S + SN
Sbjct: 306 QNVLIDDSRIHVDFSQSVARYRQYYNSN 333
Score = 31.9 bits (69), Expect = 0.082
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 612
+FV L+P + L F+ FG+I +C+++RD +T
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKET 281
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 32.3 bits (70), Expect = 0.062
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIV 597
I+VG LS IE++ L F+ FG +SN I+
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFC 639
I++ +L + + + E PFG++ + +++++ SKG CFC
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFC 356
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
GN K T ++VG+LS ++ L+E G + NC I+ P L SKG
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKG 107
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 342
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 342
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 333
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG+L E L+E F G+I R++ T K KG F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFC 639
++VG++ E+ + + F G + + ++V DP++ + KG FC
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFC 51
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 372
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 481 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 597
++T+ ++F+G+L + EAF FG+I + +I+
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRI 594
+FVG L+ + L+ F PFG I N +I
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FV +L E L F FG ++ ++V+DP T +S G F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGF 322
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FV +L+ + + + L F+ G I + +V +P+T +++G F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGF 50
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 375
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 490 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
S +F+ +L+ + L+ F PFG++ + D +T KG +
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAY 368
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKG 321
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVK 318
E T+YVGN+D +++ + F + G V+
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIV 597
+FVG + P+ + + F +G+I +C+++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 430 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
DK M+ + A + QP D HI+ + + N RE F + + R VRD
Sbjct: 878 DKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRD 935
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 230 WL--SSPILAYR-NLSITFLTSMNTNIN 156
WL ++ ILAYR NL FLT + N+N
Sbjct: 134 WLLKNASILAYRRNLKYIFLTVFSANLN 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,104
Number of Sequences: 5004
Number of extensions: 51233
Number of successful extensions: 171
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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