Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A10
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 165 2e-41
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 140 1e-33
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 91 1e-27
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 103 1e-22
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 87 8e-18
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 72 4e-13
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 59 2e-09
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 59 2e-09
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 52 4e-07
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 52 4e-07
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 51 6e-07
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 50 2e-06
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 50 2e-06
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 49 2e-06
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 49 2e-06
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 49 2e-06
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 49 2e-06
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 49 2e-06
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 49 2e-06
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 45 4e-05
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 45 4e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 45 4e-05
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 44 9e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 9e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 9e-05
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 44 9e-05
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 43 2e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 39 0.003
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 39 0.004
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 39 0.004
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 38 0.005
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 37 0.014
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 36 0.019
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 36 0.019
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 36 0.019
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 35 0.057
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 35 0.057
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 35 0.057
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 35 0.057
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 35 0.057
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 35 0.057
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 35 0.057
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 35 0.057
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.13
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 33 0.13
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.13
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 33 0.13
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.30
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 32 0.30
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 32 0.30
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 31 0.53
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 31 0.53
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 31 0.53
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.93
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 0.93
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 0.93
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 29 2.1
U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical pr... 29 2.1
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 3.8
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 3.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 5.0
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 5.0
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 5.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 6.6
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 165 bits (402), Expect = 2e-41
Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 1/143 (0%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXX 390
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I + NDPYAF+EF+ H
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQA 97
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 567
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF P
Sbjct: 98 SQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQP 157
Query: 568 FGEISNCRIVRDPQTLKSKGLCF 636
FG++S+ +++RD T KSKG F
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGF 180
Score = 35.5 bits (78), Expect = 0.033
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Frame = +1
Query: 295 FGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWAT-SPGN 471
FG + D K + + Y F+ + MN + + + ++ NWAT PG+
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGD 217
Query: 472 QPKTD--------------TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 600
Q K + ++ ++VG+++ E I R+ FA FG I+ RI +
Sbjct: 218 QEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI-RQGFASFGRITEVRIFK 273
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 140 bits (338), Expect = 1e-33
Identities = 71/139 (51%), Positives = 88/139 (63%), Gaps = 4/139 (2%)
Frame = +1
Query: 232 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 411
P+TL+V NLDP++T+ FL TLF QIG V KII E NDPYAF+EF+ H
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSH 98
Query: 412 NKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
N R +L+KEM V WA P N+ K +TS H H+FVGDL EI++ LREAF FGE+
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEV 158
Query: 580 SNCRIVRDPQTLKSKGLCF 636
S +I+RD T K KG F
Sbjct: 159 SEAKIIRDNNTNKGKGYGF 177
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 91.5 bits (217), Expect(2) = 1e-27
Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +1
Query: 409 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
+ K V+ EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 72 VTKTKVIFDEMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 131
Query: 586 CRIVRDPQTLKSKGLCF 636
+++RD T KSKG F
Sbjct: 132 AKVIRDTNTTKSKGYGF 148
Score = 49.6 bits (113), Expect(2) = 1e-27
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 333
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 411
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 412 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 546
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 224
Query: 547 LREAFAPFGEISNCRIVR 600
R+ FA FG I+ RI +
Sbjct: 225 -RQGFASFGRITEVRIFK 241
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 103 bits (247), Expect = 1e-22
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Frame = +1
Query: 409 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 1 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 60
Query: 586 CRIVRDPQTLKSKGLCF 636
+++RD T KSKG F
Sbjct: 61 AKVIRDTNTTKSKGYGF 77
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 411
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 412 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 546
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 94 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 153
Query: 547 LREAFAPFGEISNCRIVR 600
R+ FA FG I+ RI +
Sbjct: 154 -RQGFASFGRITEVRIFK 170
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 87.4 bits (207), Expect = 8e-18
Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +1
Query: 439 MKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 615
MKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+ +++RD T
Sbjct: 1 MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTT 60
Query: 616 KSKGLCF 636
KSKG F
Sbjct: 61 KSKGYGF 67
Score = 43.6 bits (98), Expect = 1e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 411
++VG+L V L F GDV K+IR+ + Y F+ + M
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 412 NKRVVLDKEMKVNWAT-SPGNQPKTD--------------TSNHHHIFVGDLSPEIETNI 546
N + + + ++ NWAT PG+Q K + ++ ++VG+++ E I
Sbjct: 84 NGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDEI 143
Query: 547 LREAFAPFGEISNCRIVR 600
R+ FA FG I+ RI +
Sbjct: 144 -RQGFASFGRITEVRIFK 160
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 71.7 bits (168), Expect = 4e-13
Identities = 30/72 (41%), Positives = 46/72 (63%)
Frame = +1
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 600
+VL + ++ A+ P + + DTS H H+FVGDLS ++ +L+ F FGE+S +++R
Sbjct: 109 IVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIR 168
Query: 601 DPQTLKSKGLCF 636
D QT KSKG F
Sbjct: 169 DVQTQKSKGYGF 180
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFL---CTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXX 390
D S ++VG+L V+ L T FG++ + K + ++ + Y F+ F
Sbjct: 130 DTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNA 189
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTD-----------TSNHHHIFVGDLSPEIE 537
MN + + + ++ NWA ++ D +++ ++VG++S +
Sbjct: 190 ENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTT 249
Query: 538 TNILREAFAPFGEISNCRIVR 600
LR+ F+ +G+I+ RI +
Sbjct: 250 DADLRDLFSTYGDIAEVRIFK 270
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 390
+ + T+YVG LD V+E L L Q G V + ++ + + F+EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 570
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ F
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 571 GEISNC-RIVRDPQTLKSKGLCF 636
G I +I+RD + SKG F
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAF 146
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXXX 390
+ + T+YVG LD V+E L L Q G V + ++ + + F+EF
Sbjct: 18 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 77
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 570
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ F
Sbjct: 78 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 133
Query: 571 GEISNC-RIVRDPQTLKSKGLCF 636
G I +I+RD + SKG F
Sbjct: 134 GVILQVPKIMRDVDSGTSKGFAF 156
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 408
+LY+G+L P V+E L F G V ++ R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 589 RIVRDPQTLKSKGLCF 636
++ D + SKG F
Sbjct: 175 KVATDDEG-NSKGYGF 189
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 414
+++ NLD + + F G++ CK+ + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 415 KRVVLDKEMKVNWATSPGNQPKT---DTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
++ DK++ V + K + ++FV + ++ L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 586 CRIVRDPQTLKSKGLCF 636
++ D Q K KG F
Sbjct: 267 AVVMTDAQG-KPKGFGF 282
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P T + +++GDL P++ +L E F+ G + + R+ RD + S G +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAY 102
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 408
+LY+G+L P V+E L F G V ++ R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 589 RIVRDPQTLKSKGLCF 636
++ D + SKG F
Sbjct: 175 KVATDDEG-NSKGYGF 189
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP-YAFLEFTCHXXXXXXXXXMN 414
+++ NLD + + F G++ CK+ + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 415 KRVVLDKEMKVNWATSPGNQPKT---DTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
++ DK++ V + K + ++FV + ++ L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 586 CRIVRDPQTLKSKGLCF 636
++ D Q K KG F
Sbjct: 267 AVVMTDAQG-KPKGFGF 282
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P T + +++GDL P++ +L E F+ G + + R+ RD + S G +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAY 102
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 52.0 bits (119), Expect = 4e-07
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 408
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 589 RIVRDPQTLKSKGLCF 636
++ D SKG F
Sbjct: 150 KVAIDEDGF-SKGYGF 164
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S G
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 634 F 636
+
Sbjct: 77 Y 77
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 414
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 415 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 585
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITS 241
Query: 586 CRIVRDPQTLKSKGLCF 636
C ++ KSKG F
Sbjct: 242 CEVMTVEG--KSKGFGF 256
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 52.0 bits (119), Expect = 4e-07
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXX 408
+LYVG+L P V E L F G V ++ R+ YA++ F
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 589 RIVRDPQTLKSKGLCF 636
++ D SKG F
Sbjct: 150 KVAIDEDGF-SKGYGF 164
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S G
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 634 F 636
+
Sbjct: 77 Y 77
Score = 38.3 bits (85), Expect = 0.005
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 414
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 415 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 585
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 241
Query: 586 CRIVRDPQTLKSKGLCF 636
C ++ KSKG F
Sbjct: 242 CEVMTVEG--KSKGFGF 256
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 51.2 bits (117), Expect = 6e-07
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Frame = +1
Query: 220 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXX 387
D KT L + L +T+ + +LF IG+++ CK++R+ Y F+ +
Sbjct: 36 DIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREED 95
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP 567
N + +K +KV++A +P D +++V + + + L F P
Sbjct: 96 ALRAVSSFNGLRLQNKTIKVSYA-----RPSNDQIKGSNLYVSGIPKSMTLHELESIFRP 150
Query: 568 FGEISNCRIVRDPQTLKSKGLCF 636
FG+I RI+ D T SKG+ F
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGF 173
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P +DT+ + +FV +LS + + +L + F+ FG I N +I+RD T + KG F
Sbjct: 367 PPSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAF 418
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 333
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 49.6 bits (113), Expect = 2e-06
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 2/138 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCFCIIC 648
+RD Q KS+G+ C
Sbjct: 174 LRD-QDGKSRGMLSAACC 190
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC 378
+ + + L++G L E L +F + G ++ C ++R+ L C
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGMLSAAC 189
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCF 636
+RD Q KS+G F
Sbjct: 174 LRD-QDGKSRGCAF 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCF 636
+RD Q KS+G F
Sbjct: 174 LRD-QDGKSRGCAF 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCF 636
+RD Q KS+G F
Sbjct: 174 LRD-QDGKSRGCAF 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCF 636
+RD Q KS+G F
Sbjct: 174 LRD-QDGKSRGCAF 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCF 636
+RD Q KS+G F
Sbjct: 174 LRD-QDGKSRGCAF 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
++VG + E LF + G V C I+R+ + C + +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQAS---KGCCFVTFYHRKDAIEAQ 113
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHH--IFVGDLSPEIETNILREAFAPFGEISNCRI 594
L + P DT N + +F+G LS + LRE FA FG I +C +
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 595 VRDPQTLKSKGLCF 636
+RD Q KS+G F
Sbjct: 174 LRD-QDGKSRGCAF 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 411
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 412 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 549
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 550 REAFAPFGEISNCRIVRDP 606
+ F FGEI C++ R P
Sbjct: 224 KSVFEAFGEIVKCQLARAP 242
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
I+VG +S EI ++LR AF PFG I + + DP T K F
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAF 147
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 411
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 412 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 549
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 550 REAFAPFGEISNCRIVRDP 606
+ F FGEI C++ R P
Sbjct: 224 KSVFEAFGEIVKCQLARAP 242
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
I+VG +S EI ++LR AF PFG I + + DP T K F
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAF 147
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXXXM 411
+YVG++ + E L F G +K + +P + +AF+E+ M
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESM 163
Query: 412 NKRVVLDKEMKVNWATS-----PGNQPKT---------DTSNHHHIFVGDLSPEIETNIL 549
N +++ + +KVN P N P+ D + ++V + P++ L
Sbjct: 164 NGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETDL 223
Query: 550 REAFAPFGEISNCRIVRDP 606
+ F FGEI C++ R P
Sbjct: 224 KSVFEAFGEIVKCQLARAP 242
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
I+VG +S EI ++LR AF PFG I + + DP T K F
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAF 147
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 44.4 bits (100), Expect = 7e-05
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Frame = +1
Query: 238 TLYVGNLDPS----VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC-HXXXXXXX 402
TLY+GNL PS VTE L F Q GD++ +++ E G AF+EFT
Sbjct: 236 TLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKG---CAFIEFTTREAAERAAE 292
Query: 403 XXMNKRVVLDKEMKVNWATSPGNQPKTDTSNH 498
NK + K + + W P + D SN+
Sbjct: 293 RSFNKTFIKGKRLTIRWG-EPQAKRAADNSNY 323
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +1
Query: 433 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 612
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++RDP T
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Query: 613 LKSKGLCF 636
+++G F
Sbjct: 83 KRARGFGF 90
Score = 44.0 bits (99), Expect = 9e-05
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Frame = +1
Query: 208 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 375
A+ D SH P +++G L T L FG+ G+V C ++R+P F
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 376 CHXXXXXXXXXMNKRV-VLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 549
+N R LD K++ A Q K T +F+G LS +
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT-KKVFIGGLSATSTLEDM 150
Query: 550 REAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++ F +G++ + ++ D T + +G F
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGF 179
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +1
Query: 484 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G F
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGF 68
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 415 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 585
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 586 CRIVRDPQTLKSKGLCF 636
I+ D T K +G F
Sbjct: 143 SEIILDKATQKPRGFGF 159
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +1
Query: 484 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G F
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGF 68
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 415 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 585
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 586 CRIVRDPQTLKSKGLCF 636
I+ D T K +G F
Sbjct: 143 SEIILDKATQKPRGFGF 159
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +1
Query: 484 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G F
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGF 68
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/137 (17%), Positives = 59/137 (43%), Gaps = 3/137 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+ ++VG L + T+ + + Q G++ ++R+P F M
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 415 KR--VVLDKEMKVNWATSPGNQPKTDTS-NHHHIFVGDLSPEIETNILREAFAPFGEISN 585
+R ++ K + A ++ +++++ + ++V + + ++L E F +G ++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTK 142
Query: 586 CRIVRDPQTLKSKGLCF 636
I+ D T K +G F
Sbjct: 143 SEIILDKATQKPRGFGF 159
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +1
Query: 433 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 612
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++RDP T
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Query: 613 LKSKGLCF 636
+++G F
Sbjct: 83 KRARGFGF 90
Score = 44.0 bits (99), Expect = 9e-05
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Frame = +1
Query: 208 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 375
A+ D SH P +++G L T L FG+ G+V C ++R+P F
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFI 91
Query: 376 CHXXXXXXXXXMNKRV-VLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 549
+N R LD K++ A Q K T +F+G LS +
Sbjct: 92 TFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT-KKVFIGGLSATSTLEDM 150
Query: 550 REAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++ F +G++ + ++ D T + +G F
Sbjct: 151 KQYFETYGKVEDAMLMFDKATQRHRGFGF 179
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDTS------NHHHIFVGDLSPEIETNILREAFAPFGE 576
K+ + +++ K + S G Q D S N +F GDL E+ +L +AF +
Sbjct: 169 KKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPS 228
Query: 577 ISNCRIVRDPQTLKSKGLCF 636
++VR+ +T KSKG F
Sbjct: 229 FQKAKVVRESRTNKSKGYGF 248
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S G
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 634 F 636
+
Sbjct: 77 Y 77
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 38.7 bits (86), Expect = 0.004
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 405
K ++VG + P V L + F Q G+V ++ + N +AF+EFT
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT-GEGCKLAL 87
Query: 406 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
++ + K ++V A S N+ +FVG L + LR F FG++ +
Sbjct: 88 AAREQTIKGKSVEVKPAKSRENKK---------VFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 586 CRIVRDPQTLKSKGLCFCI 642
D QT + F +
Sbjct: 139 IEWPFDKQTKARRNFAFIV 157
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N T + IFVG +SPE+ L F +GE++ ++ D +S+G F
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 38.7 bits (86), Expect = 0.004
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 405
K ++VG + P V L + F Q G+V ++ + N +AF+EFT
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT-GEGCKLAL 87
Query: 406 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
++ + K ++V A S N+ +FVG L + LR F FG++ +
Sbjct: 88 AAREQTIKGKSVEVKPAKSRENKK---------VFVGGLPSDYSEQDLRSHFEQFGKVDD 138
Query: 586 CRIVRDPQTLKSKGLCFCI 642
D QT + F +
Sbjct: 139 IEWPFDKQTKARRNFAFIV 157
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N T + IFVG +SPE+ L F +GE++ ++ D +S+G F
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 372 YVSHGGGHSAGRHEQASGPRQGNEG 446
Y S G +S ++QA G RQGN G
Sbjct: 266 YQSFAGNNSGFDYQQAQGARQGNNG 290
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 38.3 bits (85), Expect = 0.005
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 414
+++ NLD + + F G++ CK+ I E G + Y F+ F +N
Sbjct: 59 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 118
Query: 415 KRVVLDKEMKVN--WATSPGNQPKTDTSNHH-HIFVGDLSPEIETNILREAFAPFGEISN 585
++ K++ V + N+ +T+ +++V + L + FA FG I++
Sbjct: 119 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 178
Query: 586 CRIVRDPQTLKSKGLCF 636
C ++ KSKG F
Sbjct: 179 CEVMTVEG--KSKGFGF 193
Score = 33.9 bits (74), Expect = 0.100
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +1
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 30 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 86
Query: 589 RIVRDPQTLKSKGLCF 636
++ D SKG F
Sbjct: 87 KVAIDEDGF-SKGYGF 101
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
I++G LS + + F+ +GE+ N ++RD T KSKG F
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAF 83
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 381
+Y+G L +++E + +F Q G+V +IR+ F C+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 220 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 387
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATS 462
M+ ++ D+ + V+++ S
Sbjct: 295 CEQAFFKMDNVLIDDRRIHVDFSQS 319
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
+FV L+P L F+ FG+I+NC IVRD
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD 275
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 220 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 387
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 294
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATS 462
M+ ++ D+ + V+++ S
Sbjct: 295 CEQAFFKMDNVLIDDRRIHVDFSQS 319
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
+FV L+P L F+ FG+I+NC IVRD
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD 275
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 220 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXX 387
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 166 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKS 225
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATS 462
M+ ++ D+ + V+++ S
Sbjct: 226 CEQAFFKMDNVLIDDRRIHVDFSQS 250
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
+FV L+P L F+ FG+I+NC IVRD
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRD 206
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 36.3 bits (80), Expect = 0.019
Identities = 29/113 (25%), Positives = 49/113 (43%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
L+VGNL V E L LF GD+ C + +AFL ++ R
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYL----SGKGFAFLRLDTRAHAESAKEAIDGR 173
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
++ ++++V +A + I V +LSP + +L AF+ FG++
Sbjct: 174 IIHGRQVRVRFAV-----------HGAAIRVKELSPTVSNEMLYHAFSHFGDV 215
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
PK + +FVG+L E++ L+E F+P G+I+ C
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 36.3 bits (80), Expect = 0.019
Identities = 29/113 (25%), Positives = 49/113 (43%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNKR 420
L+VGNL V E L LF GD+ C + +AFL ++ R
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYL----SGKGFAFLRLDTRAHAESAKEAIDGR 173
Query: 421 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
++ ++++V +A + I V +LSP + +L AF+ FG++
Sbjct: 174 IIHGRQVRVRFAV-----------HGAAIRVKELSPTVSNEMLYHAFSHFGDV 215
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
PK + +FVG+L E++ L+E F+P G+I+ C
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPG-NDPYAFLEFTCHXXXXXXXX 405
+TLYVG VTE L F GDV I E G + + F+EF
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID 70
Query: 406 XMNKRVVLDKEMKVNWATSP 465
MN+ + K ++VN+A P
Sbjct: 71 NMNESELFGKTIRVNFARPP 90
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG + ++ +L AF PFG++ I D ++ K +G F
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGF 56
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
+FVG + +E LR F FG+I I++D T KG F C
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYC 78
Score = 33.9 bits (74), Expect = 0.100
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCHXXXXXXXXXM 411
L+VG + ++ E L LF Q G + I+++ + AFL + +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 412 NKRVVL---DKEMKVNWATSPGN--QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 576
+ + L ++ M+V A + PK D + +F+G LS + + +R FA FGE
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 577 ISNCRIVRDPQTLKSKGLCF 636
+ ++R SKG F
Sbjct: 150 LDEVTVLRGADG-ASKGCAF 168
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 502 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++F+ L E L + FAPFG I + ++ D T +SK CF
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSK--CF 472
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
+FVG+L +++N L++ F PF +++ C IV++
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN 37
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
PK + +FVG+L E++ L+E F+P G+I+ C
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC 145
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
+FVG+L +++N L++ F PF +++ C IV++
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN 37
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 34.7 bits (76), Expect = 0.057
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
+FVG + +E LR F FG+I I++D T KG F C
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYC 78
Score = 33.9 bits (74), Expect = 0.100
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCHXXXXXXXXXM 411
L+VG + ++ E L LF Q G + I+++ + AFL + +
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATL 90
Query: 412 NKRVVL---DKEMKVNWATSPGN--QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 576
+ + L ++ M+V A + PK D + +F+G LS + + +R FA FGE
Sbjct: 91 HDQKTLPGMNRAMQVKPADTDSRPASPK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 577 ISNCRIVRDPQTLKSKGLCF 636
+ ++R SKG F
Sbjct: 150 LDEVTVLRGADG-ASKGCAF 168
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 502 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++F+ L E L + FAPFG I + ++ D T +SK CF
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSK--CF 472
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 34.7 bits (76), Expect = 0.057
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 396
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 218
Query: 397 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 576
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 219 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 276
Query: 577 ISN 585
+ N
Sbjct: 277 VEN 279
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 34.7 bits (76), Expect = 0.057
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 396
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 164 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 218
Query: 397 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 576
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 219 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 276
Query: 577 ISN 585
+ N
Sbjct: 277 VEN 279
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 34.7 bits (76), Expect = 0.057
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXX 396
D+ +TL+VGN+ V E + +F + G V+ I D YAF+ F
Sbjct: 141 DDEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMF-----QTV 195
Query: 397 XXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE 576
K D+ ++ + K+ S +FVG L + IL++AF FG
Sbjct: 196 DQAIQAKAEEQDRPIRAGGSRMKIGYGKSQVS--RRLFVGGLGSWCDKEILQKAFGEFGF 253
Query: 577 ISN 585
+ N
Sbjct: 254 VEN 256
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
H I+VG + ++ + L F G+I + R++ DP + S+G F C
Sbjct: 200 HEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYC 249
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
IFVG L L E F FG+I ++ D T KS+G F
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGF 80
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 547 LREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+RE ++ FGEI++ ++RDP T +S+G F
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGF 30
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +1
Query: 547 LREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+RE ++ FGEI++ ++RDP T +S+G F
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGF 30
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS + L F+ +G + + ++RDP T S+G F
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGF 94
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS + L F+ +G + + ++RDP T S+G F
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGF 114
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS + L F+ +G + + ++RDP T S+G F
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGF 115
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXX 408
++YVGN+ TE + F +G V +I+ RE G +AF+EF+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 409 MNKRVVLDKEMKVNWA 456
+N + ++VN+A
Sbjct: 67 LNGVAFNGRNLRVNYA 82
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG++ + + FA G ++N RIV D +T + +G F
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAF 51
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 547 LREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
L E F+ G + + RI+ D +T +SKG+C+
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICY 70
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
+PGN+ T H+ V +L P+I+ ++R+ F FG I
Sbjct: 120 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRI 153
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 547 LREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
L E F+ G + + RI+ D +T +SKG+C+
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICY 215
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
+PGN+ T H+ V +L P+I+ ++R+ F FG I
Sbjct: 265 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRI 298
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 348
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 184 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 225
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 348
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 158 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 199
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGNDP---YAFLEF 372
++VGNL +TE L T F QIG V+ +I+R+ +AF+ F
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 511 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ +LS + N LR F +G+I + I RD + +SKG F
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 511 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ +LS + N LR F +G+I + I RD + +SKG F
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 511 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
V +LS LR+ F FGEI+ C +V D + S+G F
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGF 121
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG+ + L F+ G+I+N RIV D +T + +G F
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAF 50
>U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical
protein K03B4.1 protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 220 DESH-PKTLYVGNLDPSVTEVFLCTLFGQ 303
D SH P T VGN P++T FL T FG+
Sbjct: 193 DSSHFPLTYLVGNSLPAITSPFLKTSFGE 221
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 333
D+ + +YV N+ SVTE L FG G + KI+
Sbjct: 195 DDPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKIL 232
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG+ + + L F+ G +SN RIV D +T + +G F
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAF 49
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 430 DKEMKVNWATSPGNQPKTDTS--NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 603
D E +P Q KTD S +F+ +LS + + +++E + FG+I I +
Sbjct: 238 DDEEPAKKPKNPKAQLKTDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKY 297
Query: 604 PQTLKSKGLCF 636
+ SKG F
Sbjct: 298 KDSGHSKGTAF 308
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVK 318
TLYVGNL E + LFG+ GDV+
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVR 64
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 381
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 381
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 508 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 380
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 508 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 380
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 508 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 380
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 508 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 380
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 508 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACSWRPALWPPPC 380
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+TL++ + ++ E L G+ K+I GN A++ M
Sbjct: 525 RTLWLKKIPTNIVENDLKQAVESCGEASRVKVI---GNRACAYITMENRRSANDVVSKMR 581
Query: 415 KRVVLDKEMKVNWATSPG 468
+ V K +KV WA SPG
Sbjct: 582 EVSVAKKMVKVYWARSPG 599
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,830
Number of Sequences: 27780
Number of extensions: 294298
Number of successful extensions: 897
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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