Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_A10
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 96 2e-20
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 90 1e-18
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 89 2e-18
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 89 2e-18
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 77 1e-14
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 77 1e-14
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 74 9e-14
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 69 2e-12
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 67 1e-11
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 67 1e-11
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 66 1e-11
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 66 3e-11
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 64 8e-11
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 63 1e-10
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 63 1e-10
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 62 3e-10
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 60 1e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 59 3e-09
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 54 8e-08
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 50 1e-06
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 50 1e-06
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 49 2e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 49 3e-06
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 48 5e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 46 3e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 45 4e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 44 9e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 44 1e-04
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 42 5e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 41 6e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 41 6e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 41 8e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 41 8e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 40 0.001
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 40 0.001
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 40 0.001
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 40 0.001
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 40 0.001
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 40 0.001
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 40 0.002
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 0.002
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 40 0.002
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 39 0.002
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 39 0.003
At4g10610.1 68417.m01735 RNA-binding protein, putative 39 0.003
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 39 0.003
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 38 0.004
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.006
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.006
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.006
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 38 0.006
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 38 0.008
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 37 0.010
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 37 0.010
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 37 0.013
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 37 0.013
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.018
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.018
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.018
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.018
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.018
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 36 0.023
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.023
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.023
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.023
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 36 0.031
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.031
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.031
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 35 0.041
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 35 0.041
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 35 0.041
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 35 0.054
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 35 0.054
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 35 0.054
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 35 0.054
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 35 0.054
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 35 0.054
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 35 0.054
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.054
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.054
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.054
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 34 0.071
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 34 0.071
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 34 0.071
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 34 0.071
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 34 0.071
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 34 0.094
At5g24440.1 68418.m02880 RNA-binding protein, putative 34 0.094
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 34 0.094
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.094
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 34 0.094
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 34 0.094
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.094
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.094
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 34 0.094
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.094
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.094
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.12
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.12
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.12
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 33 0.16
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.22
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.22
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 33 0.22
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.29
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.29
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.29
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.29
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.29
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 32 0.29
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 32 0.38
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 32 0.38
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 32 0.38
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.38
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.38
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.38
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.38
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.38
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 31 0.50
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 31 0.50
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.50
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.50
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.50
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 0.50
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 0.66
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 31 0.66
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 31 0.66
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 31 0.66
At2g45260.1 68415.m05634 expressed protein contains Pfam profile... 31 0.66
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.66
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.87
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 31 0.87
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 31 0.87
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 0.87
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 31 0.87
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.87
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.87
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.87
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 30 1.2
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 1.2
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 30 1.2
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 30 1.2
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 30 1.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.2
At1g05400.1 68414.m00548 hypothetical protein contains Pfam prof... 30 1.5
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.0
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 2.0
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 2.0
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.7
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 2.7
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 2.7
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.5
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.5
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 3.5
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 29 3.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 3.5
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 4.7
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 28 4.7
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 4.7
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 6.1
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 8.1
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 8.1
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 27 8.1
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 95.9 bits (228), Expect = 2e-20
Identities = 48/139 (34%), Positives = 79/139 (56%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 399
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 580 SNCRIVRDPQTLKSKGLCF 636
S+ R++ D +T +S+G F
Sbjct: 175 SDARVMWDQKTGRSRGFGF 193
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 223 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 390
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 319
Query: 391 XXXXXXMNKRVVL-DKEMKVNWATSP 465
N + L ++++ +W P
Sbjct: 320 ALAIQMGNAQPFLFSRQIRCSWGNKP 345
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 89.8 bits (213), Expect = 1e-18
Identities = 49/139 (35%), Positives = 78/139 (56%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 399
D S +++YVGN+ VTE L +F G V+ K+IR+ + Y F+ +
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-YGFVHYFDRRSAALA 112
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 580 SNCRIVRDPQTLKSKGLCF 636
S+ R++ D +T +S+G F
Sbjct: 171 SDARVMWDQKTGRSRGFGF 189
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 411
T+YVGNL P VT++ L F +G ++ ++ R+ G + F+ + H
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKG---FGFVRYNTHPEAALAIQMG 322
Query: 412 NKRVVL-DKEMKVNWATSP 465
N + L ++++K +W P
Sbjct: 323 NTQPYLFNRQIKCSWGNKP 341
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 89.0 bits (211), Expect = 2e-18
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 399
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 580 S----NCRIVRDPQTLKSKGLCF 636
S + R++ D +T +S+G F
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGF 197
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +1
Query: 223 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 390
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 323
Query: 391 XXXXXXMNKRVVL-DKEMKVNWATSP 465
N + L ++++ +W P
Sbjct: 324 ALAIQMGNAQPFLFSRQIRCSWGNKP 349
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 89.0 bits (211), Expect = 2e-18
Identities = 49/139 (35%), Positives = 78/139 (56%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 399
D S +++YVGN+ VTE L +F G V+ CK+IR+ + Y F+ +
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-YGFVHYFDRRSAGLA 107
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 579
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ +L F+ +
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQ--REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 580 SNCRIVRDPQTLKSKGLCF 636
S+ R++ D +T +S+G F
Sbjct: 166 SDARVMWDQKTGRSRGFGF 184
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 411
T+YVGNL P V++V L F +G ++ ++ R+ G + F+ ++ H
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG---FGFVRYSTHVEAALAIQMG 317
Query: 412 NKRVVLD-KEMKVNWATSP 465
N L ++MK +W + P
Sbjct: 318 NTHSYLSGRQMKCSWGSKP 336
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 600
P D S ++VG++ ++ +L+E FA G + +C+++R
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR 87
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 77.0 bits (181), Expect = 1e-14
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP--GN-DPYAFLEFTCHXXXXXXXX 405
+TL++G+L V E +L + F Q G++ K+IR G + Y F+EF H
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 406 XMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFGE 576
N + E+ ++NWA S G+ K D H IFVGDL+P++ +L+E F +
Sbjct: 84 TYNGTQMPGTELTFRLNWA-SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 577 ISNCRIVRDPQTLKSKGLCF 636
+ ++V DP T +SKG F
Sbjct: 143 VRGAKVVTDPSTGRSKGYGF 162
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
T+ V NLD +VTE L F Q+G+V KI P Y +++F M
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 418 RVVLDKEMKVNWATSPG 468
+V+ + ++++W+ +PG
Sbjct: 295 QVIGQQAVRISWSKNPG 311
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 77.0 bits (181), Expect = 1e-14
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN---DPYAFLEFTCH 381
N G ++L++G+L P + E +L +FG G+ K+IR N + Y F+EF H
Sbjct: 72 NPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNH 131
Query: 382 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 555
N + E ++NWA + + H +FVGDL+P++ ++L E
Sbjct: 132 ATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Query: 556 AF-APFGEISNCRIVRDPQTLKSKGLCF 636
F A + + ++V D T +SKG F
Sbjct: 192 TFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Score = 40.7 bits (91), Expect = 8e-04
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 390
E T++VG+L P VT+ L F + VKG K++ R G Y F+ F
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 391 XXXXXXMNKRVVLDKEMKV--------------NWATSPGNQPKTDTSNHHHIFVGDLSP 528
MN + + M+ ++ + GN ++D +N IFVG +
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT-IFVGAVDQ 287
Query: 529 EIETNILREAFAPFGEISNCRI 594
+ + L+ F FGE+ + +I
Sbjct: 288 SVTEDDLKSVFGQFGELVHVKI 309
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 223 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXX 396
ES P T++VG +D SVTE L ++FGQ G++ KI P F+++
Sbjct: 272 ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAGKRCGFVQYANRACAEQ 328
Query: 397 XXXXMNKRVVLDKEMKVNWATSPGNQ 474
+N + + ++++W SP N+
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGRSPSNK 354
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
G+Q +++GDL P ++ N L F GE + +++R+ Q S+G F
Sbjct: 69 GSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGF 125
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 73.7 bits (173), Expect = 9e-14
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCH 381
N G S K+L++G+L + E ++ ++F Q G+ K+IR ++ Y F+EF H
Sbjct: 52 NPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSH 111
Query: 382 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHH-IFVGDLSPEIETNILR 552
N + E ++NWA + + + T H IFVGDL+PE+ +L
Sbjct: 112 SVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLS 171
Query: 553 EAFA-PFGEISNCRIVRDPQTLKSKGLCF 636
+ F +G + ++V D T +SKG F
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGF 200
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 390
E T++VG+L P VT+ L F + G VKG K++ R G Y F+ F
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKT--------------DTSNHHHIFVGDLSP 528
MN + + M++ A + P + N+ IFVG L
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDA 269
Query: 529 EIETNILREAFAPFGEISNCRI 594
+ + L+ F FGE+ + +I
Sbjct: 270 NVTDDELKSIFGQFGELLHVKI 291
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 208 ANMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHX 384
AN GD + + T++VG LD +VT+ L ++FGQ G++ KI P F+++
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKA 306
Query: 385 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQ 474
+N + + ++++W SP Q
Sbjct: 307 SAEHALSVLNGTQLGGQSIRLSWGRSPNKQ 336
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
G+Q S+ +++GDL ++ N + FA GE ++ +++R+ T +S+G F
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGF 105
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 69.3 bits (162), Expect = 2e-12
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Frame = +1
Query: 214 MGDESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHX 384
+ D++HP + LY G+LDP VTE L LF + +V ++ R+ YA++ F+
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 385 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 564
+N + D+ +++ + P T S +IF+ +L I+ L E F+
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSN---RDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 565 PFGEISNCRIVRDPQTLKSKGLCF 636
FG I +C++ D T +SKG F
Sbjct: 158 SFGTILSCKVAMD-VTGRSKGYGF 180
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 342
N ++S LY+ NLD SV + L +F + G+V K++ P
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 399
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 400 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA-P 567
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 568 FGEISNCRIVRDPQTLKSKGLCF 636
+ + ++V D T +SKG F
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGF 243
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 399
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 400 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA-P 567
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 568 FGEISNCRIVRDPQTLKSKGLCF 636
+ + ++V D T +SKG F
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGF 243
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 418 RVVLDKEMKVNWATSPGN-QPKTDTSN 495
V+ + ++++W +P N QP+ N
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGN 388
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 66.5 bits (155), Expect = 1e-11
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Frame = +1
Query: 217 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEFTCHXX 387
G KTL+VG+L + E +L + F G+V K+IR ++ Y F+EF
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 388 XXXXXXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 558
+ V+ D+ ++NWA+ S G + + +FVGDLSP++ +L E
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHET 221
Query: 559 FAP-FGEISNCRIVRDPQTLKSKGLCF 636
F+ + + + ++V D T +SKG F
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGF 248
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +1
Query: 223 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXX 402
ES T++VG +DP V + L F Q G+V KI P F++F
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVGKGCGFVQFADRKSAEDAI 373
Query: 403 XXMNKRVVLDKEMKVNWATSPGNQPKTDT 489
+N V+ ++++W SP Q + D+
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDS 402
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 448 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 594
N + G+Q +++N IFVG + P++ LR+ F+ FGE+ + +I
Sbjct: 305 NGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI 352
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Frame = +1
Query: 223 ESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXX 393
++HP + LYVG+LDPSV E L LF Q+ V ++ R+ + YA++ F
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99
Query: 394 XXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG 573
+N + D+ +++ + P T S ++F+ +L I+ L E F+ FG
Sbjct: 100 RAMESLNYAPIRDRPIRIMLS---NRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 156
Query: 574 EISNCRIVRDPQTLKSKGLCF 636
I +C++ D +SKG F
Sbjct: 157 TILSCKVAMD-VVGRSKGYGF 176
Score = 34.3 bits (75), Expect = 0.071
Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXXXXXXMN 414
+YV NL +T+ L FG+ GD+ +++ + GN + F+ F MN
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 415 -------------KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 555
+ D+E ++ + + ++++ +L + L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 556 AFAPFGEISNCRIVRDPQTLKSKGLCF 636
F+ +G +++C+++ + Q L S+G F
Sbjct: 347 MFSEYGNVTSCKVMMNSQGL-SRGFGF 372
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 64.1 bits (149), Expect = 8e-11
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXX 390
+ + T+YVG LD ++E L LF Q G V + ++ + Y F+E+
Sbjct: 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 570
+N + K ++VN A+ Q K ++F+G+L P+++ +L + F+ F
Sbjct: 80 DYAIKVLNMIKLHGKPIRVNKAS----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 571 GEI-SNCRIVRDPQTLKSKGLCF 636
G I SN +I+RDP T S+G F
Sbjct: 136 GVIASNPKIMRDPDTGNSRGFGF 158
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 63.3 bits (147), Expect = 1e-10
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 405
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 406 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 573
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 574 EISNCRIVRDPQTLKSKGLCF 636
+ ++V D T ++KG F
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGF 201
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
T++VG LD SVT+ L +F Q G++ KI P F++F+ +N
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLNG 318
Query: 418 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 504
+ ++++W SP N+ D S ++
Sbjct: 319 VQLGGTTVRLSWGRSPSNKQSGDPSQFYY 347
Score = 37.5 bits (83), Expect = 0.008
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 387
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATS----PGNQPKTDTS----------NHHHIFVGDLS 525
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 526 PEIETNILREAFAPFGEISNCRI 594
+ + L+ F+ +GEI + +I
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKI 292
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A P QP T +++GDL ++ N L FA GE+ + +++R+ QT + +G
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106
Query: 634 F 636
F
Sbjct: 107 F 107
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 63.3 bits (147), Expect = 1e-10
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 405
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 406 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 573
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 574 EISNCRIVRDPQTLKSKGLCF 636
+ ++V D T ++KG F
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGF 201
Score = 37.5 bits (83), Expect = 0.008
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 387
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATS----PGNQPKTDTS----------NHHHIFVGDLS 525
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 526 PEIETNILREAFAPFGEISNCRI 594
+ + L+ F+ +GEI + +I
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKI 292
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A P QP T +++GDL ++ N L FA GE+ + +++R+ QT + +G
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106
Query: 634 F 636
F
Sbjct: 107 F 107
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 375
T++VG LD SVT+ L +F Q G++ KI P F++F+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFS 304
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 62.1 bits (144), Expect = 3e-10
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 405
KTL+VG+L + E +L T F +V K+IR ++ Y F+EF
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 406 XMNKRVVLDKEM--KVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA-PFG 573
+ + + E ++NWA+ S G + ++ IFVGDL+P++ +L E FA +
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 574 EISNCRIVRDPQTLKSKGLCF 636
+ ++V D T +SKG F
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGF 259
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +1
Query: 211 NMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXX 387
+M D ES+ T++VG LD VTE L F G+V KI P F++F
Sbjct: 318 SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVGKGCGFVQFANRQS 374
Query: 388 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN 495
+N V+ ++++W SP Q ++D+ N
Sbjct: 375 AEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
Score = 38.3 bits (85), Expect = 0.004
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Frame = +1
Query: 238 TLYVGNLDPSVTE-VFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 405
+++VG+L P V++ V L T G+ VKG K++ + + Y F+ F
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 406 XMNKRVVLDKEMKVNWATSP---------------------GNQPKTD-TSNHHHIFVGD 519
MN ++M+V AT GN +D SN+ IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 520 LSPEIETNILREAFAPFGEISNCRI 594
L ++ L + F+ FGE+ + +I
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKI 358
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 399
KT++VG+L + E +L + F + ++ K+IR N + Y F+EF H
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 400 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA-P 567
N + D+ ++NWA+ S G + + IFVGDL+P++ +L E F+
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 568 FGEISNCRIVRDPQTLKSKGLCF 636
+ + ++V D T +SKG F
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGF 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 418 RVVLDKEMKVNWATSPGN-QPKTDTSN 495
V+ + ++++W +P N QP+ N
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGN 390
Score = 31.1 bits (67), Expect = 0.66
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 405
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 406 XMNKRVVLDKEMKVNWAT---------SPGNQP-------KTDTSNHHHIFVGDLSPEIE 537
MN + M++ AT G P + DT N IFVG L +
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTT-IFVGGLDSSVT 318
Query: 538 TNILREAFAPFGEISNCRI 594
L++ F+ FGEI + +I
Sbjct: 319 DEDLKQPFSEFGEIVSVKI 337
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGNDP-YAFLEFTCHXXXXXXXXXMN 414
++V NL SVT L +F + G++ CK+ E G Y F++F +N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 594
+V DKE+ V ++ K + + ++++ +L ++ ++LRE FA FG+I + I
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPE-EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 595 VRDPQTLKSKGLCF 636
+D L +G F
Sbjct: 233 AKDENRL-CRGYAF 245
Score = 49.6 bits (113), Expect = 2e-06
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
Frame = +1
Query: 208 ANMGDESHPKT--LYVGNLDPSVTEVFLCTLFGQ---IGDVKGCKIIREPGNDPYAFLEF 372
A+ S P T LYVG+L PSVTE L F + + V+ CK + Y + F
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
Query: 373 TCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 552
N ++ K ++V W+ + + N +FV +L + +L+
Sbjct: 73 LSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN---VFVKNLPESVTNAVLQ 129
Query: 553 EAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ F FG I +C+ V + KS+G F
Sbjct: 130 DMFKKFGNIVSCK-VATLEDGKSRGYGF 156
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 54.0 bits (124), Expect = 8e-08
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Frame = +1
Query: 217 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXX 390
G++ +YV NL S+++ L +FG+ G C I+R E + + F+ F
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
Query: 391 XXXXXXMNKRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPE 531
+N + DKE V A + D S +++V +L
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 532 IETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ + LRE FAPFG I++C+++RDP + S+G F
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRDPSGV-SRGSGF 371
Score = 52.0 bits (119), Expect = 3e-07
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 408
+LYVG+LD +VT+ L F Q G V ++ R+ Y ++ +
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
+N + + ++V ++ + K+ N IF+ +L I+ L E F+ FG I +C
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGN---IFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 589 RIVRDPQTLKSKGLCF 636
++ DP +SKG F
Sbjct: 163 KVAVDPSG-QSKGYGF 177
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXX 393
D+S LYV NLD SVT+ L F G + CK++R+P + F+ F+
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEAT 381
Query: 394 XXXXXMNKRVVLDKEMKV 447
MN ++++ K + V
Sbjct: 382 RAITEMNGKMIVTKPLYV 399
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 50.0 bits (114), Expect = 1e-06
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 411
L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 412 NKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNILREAFAPFGEIS 582
N V + + VN A G++P+ + I+VG+L ++++ L F+ G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 583 NCRIVRDPQTLKSKGLCF 636
+ R+V D +T +S+G F
Sbjct: 235 DARVVSDRETGRSRGFGF 252
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 50.0 bits (114), Expect = 1e-06
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Frame = +1
Query: 214 MGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFT 375
+G+ H +LYVG+L P VTE L F V + R YA++ F
Sbjct: 11 LGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFD 70
Query: 376 CHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 555
+N + K M++ W+ + + +++V +L I ++ L
Sbjct: 71 SPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLER 130
Query: 556 AFAPFGEISNCRIVRDPQTLKSKGLCF 636
F PFG I +C++V + +SKG F
Sbjct: 131 MFCPFGSILSCKVVE--ENGQSKGFGF 155
Score = 33.9 bits (74), Expect = 0.094
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Frame = +1
Query: 178 VKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE------ 339
V K I++ A M +YV NL +VT+ L TLF Q G V ++R+
Sbjct: 183 VAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR 242
Query: 340 ---------PGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTS 492
P N A +E C + K + D+ ++ N
Sbjct: 243 GFGFVNFCNPENAKKA-MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM 301
Query: 493 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+++V +LS + LRE F +G+I + +++ + +SKG F
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGF 348
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 50.0 bits (114), Expect = 1e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Frame = +1
Query: 217 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN-DPYAFLEFTCHXXXX 393
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 394 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 561
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTKK--IFVGGIPSTVTEDELKDFF 129
Query: 562 APFGEISNCRIVRDPQTLKSKGLCFCI 642
A +G + +++RD +T +S+G F I
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVI 156
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 172 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 339
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 50.0 bits (114), Expect = 1e-06
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Frame = +1
Query: 217 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN-DPYAFLEFTCHXXXX 393
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 394 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 561
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTKK--IFVGGIPSTVTEDELKDFF 129
Query: 562 APFGEISNCRIVRDPQTLKSKGLCFCI 642
A +G + +++RD +T +S+G F I
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVI 156
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 172 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 339
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 49.2 bits (112), Expect = 2e-06
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 414
+YV NL + T+ L T FGQ G + ++R+ + F+ F +N
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 415 KRVVLDKEMKVNWATSPGN----------QPKTDTSNHH---HIFVGDLSPEIETNILRE 555
+ DKE V A Q +D N +++V +L + LRE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 556 AFAPFGEISNCRIVRDPQ-TLKSKG 627
FA FG I++C+++RDP T K G
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSG 371
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 408
+LYVG+LD +VT+ L F ++ V ++ R+ + Y ++ ++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 409 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
+N + K +++ +++ + ++ N +FV +L ++ L EAF+ G I +C
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGN---LFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 589 RIVRD 603
++ D
Sbjct: 164 KVATD 168
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 217 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXX 390
G++ LYV NLD +VT+ L LF + G + CK++R+P + F+ F+
Sbjct: 322 GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
Query: 391 XXXXXXMNKRVVLDKEMKV 447
MN ++V K + V
Sbjct: 382 SRVLNEMNGKMVGGKPLYV 400
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 48.8 bits (111), Expect = 3e-06
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Frame = +1
Query: 208 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTC 378
A + S L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 379 HXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNIL 549
N+ + + + VN A G++P+ + ++VG+L +++ L
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 550 REAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ F+ G++ R+V D +T +S+G F
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGF 289
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTCHXXXXXXXXXMNK 417
++VG L T FG+ G++ I+++ P F T +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 418 RVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 597
+++ K++++ G+ D IFVG + ++ + +E F FGE+ +I+
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKK-IFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 598 RDPQTLKSKGLCF 636
RD T +S+G F
Sbjct: 163 RDHSTGRSRGFGF 175
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 46.4 bits (105), Expect = 2e-05
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 411
LY GNL +V L + + + +++ R+ G +AF+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 412 NKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 588
+ L + +KVN+A P N+ H +FVG+LS + + L AF G++
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGA 206
Query: 589 RIVRDPQTLKSKGLCF 636
R+V D T +S+G F
Sbjct: 207 RVVFDGDTGRSRGYGF 222
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 45.6 bits (103), Expect = 3e-05
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Frame = +1
Query: 226 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXX 399
S P L+VG + T FG+ G+V I+ R GN P F T
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGN-PRGFGFVTFADSAVAE 121
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTD---TSNHHHIFVGDLSPEIETNILREAFAPF 570
V+ D+++ + T P TD S IFVG L P +E + L+ F +
Sbjct: 122 KVLEEDHVIDDRKVDLK-RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVY 180
Query: 571 GEISNCRIVRDPQTLKSKGLCF 636
G+I +I+ D T +S+G F
Sbjct: 181 GDIIEHQIMYDHHTGRSRGFGF 202
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 45.2 bits (102), Expect = 4e-05
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXXMN 414
++V NLD S+ LC +F G V CK+ R+ + Y F++F N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 594
++ ++ + V S G K+ +++V +L L+ F FGEI++ +
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRVFT--NVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 595 VRD 603
++D
Sbjct: 151 MKD 153
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 414
LYV NLD SV L LF + G + CK+ + G + F+EF+ MN
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 415 KRVVLDKEMKVNWA 456
++V +K + V+ A
Sbjct: 285 GKMVGNKPIYVSLA 298
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +1
Query: 475 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P S ++FV +L I+ L + F+ FG++ +C++ RD + SKG F
Sbjct: 23 PSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGF 75
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 44.0 bits (99), Expect = 9e-05
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXXXXXXXXMN 414
+YV NL S T+ L FG+ G + +++ E + + F+ F +N
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 415 KRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPEIETNILRE 555
DKE V A + D +++V +L P I L+E
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 150
Query: 556 AFAPFGEISNCRIVRDPQ-TLKSKG 627
F+PFG +++ +++RDP T K G
Sbjct: 151 IFSPFGTVTSSKVMRDPNGTSKGSG 175
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 342
D+ LYV NLDPS+++ L +F G V K++R+P
Sbjct: 127 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 167
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
IFVG LSPE+ L AF+ FG+I +C+I+ + T +S+G F
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGF 52
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 411
++VG L P VT+ L F + GD+ C+I+ R+ G + F+ F M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 412 NKRVVLDKEMKVNWA 456
+ R D+ + VN A
Sbjct: 69 HGRDFGDRVISVNRA 83
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 493 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N + +F GDL E+ ++L +AFA F + +++RD +T K+KG F
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGF 182
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 375
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF+
Sbjct: 123 EDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFS 175
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 412 NKRVVLDKEMKVNWATS-----PGNQPKT--DTSNHHHIFVGDLSPEIETNILREAFAPF 570
NK+V +++ + N+ PG K + S ++V D+ + L F+
Sbjct: 92 NKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSC 151
Query: 571 GEISNCRIVRDPQTL 615
G++ +CRI DP ++
Sbjct: 152 GQVVDCRICGDPNSV 166
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/60 (43%), Positives = 32/60 (53%)
Frame = +1
Query: 457 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
TS P DT+ H +FVG L+ E T+ +R F FGEI I+ D T KSKG F
Sbjct: 4 TSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGF 62
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FV LS LR+ F+PFG+I R++RD +T + KG F
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGF 52
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
IFVG L L++ F GE++ RI+++PQT KSKG F
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAF 259
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 342
++VG+LD +E L +FG +G+V +I++ P
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNP 249
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +1
Query: 346 NDPYAFLEFTCHXXXXXXXXXMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVG 516
N YAFLEF+ + K+ V+ +K KV++ S + + IF+
Sbjct: 337 NRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFID 396
Query: 517 DLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
L P +R+ P+G++ + R+ + + K F
Sbjct: 397 GLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGF 436
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG+LSP ++LREAF+ +G + + ++RD T +S+G F
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGF 48
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCH 381
+YVGNL P+ T+ L F G+V ++R+ D + F+ ++ H
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSH 54
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
IFVG LSP + +L+EAF FG+I + +V D ++ S+G F
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGF 81
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 496 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
H IFV L + +T L EAF +GEI +C+ V D + KSKG F +
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A S Q I+V ++ E++ L F+ FGEI + D T + KG C
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 634 FCI 642
+
Sbjct: 290 LFV 292
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 496 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
H IFV L + +T L EAF +GEI +C+ V D + KSKG F +
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A S Q I+V ++ E++ L F+ FGEI + D T + KG C
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 634 FCI 642
+
Sbjct: 290 LFV 292
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 496 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
H IFV L + +T L EAF +GEI +C+ V D + KSKG F +
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
A S Q I+V ++ E++ L F+ FGEI + D T + KG C
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 634 FCI 642
+
Sbjct: 290 LFV 292
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEF 372
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF
Sbjct: 136 EDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEF 187
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 615
++ + + S ++V D+ + L F+ G++ +CRI DP ++
Sbjct: 131 SKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSV 179
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 375
+T+YV +LD VTE L LF G V C+I +P + +AF+EFT
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFT 220
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 615
++V DL ++ L F G++ +CRI DP ++
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSV 211
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +1
Query: 220 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-------YAFLEF 372
D+ P+T LYVGNL P V E FL FG+ G + KI+ P D F+ F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIM-WPRTDEEKRRQRNCGFVSF 230
Query: 373 TCHXXXXXXXXXMNKRVVLDKEMKVNW 453
M +V + E+K+ W
Sbjct: 231 MNRADGQAAKDEMQGIIVYEYELKIGW 257
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/41 (36%), Positives = 28/41 (68%)
Frame = +1
Query: 502 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSK 624
+++VG+LSP+++ N L F FG I++ +I+ P+T + K
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMW-PRTDEEK 219
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +1
Query: 457 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
TS P DT+ + +FVG L+ E T+ +R F FGEI I+ D T KSKG F
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +1
Query: 457 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
TS P DT+ + +FVG L+ E T+ +R F FGEI I+ D T KSKG F
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G ++ ++ + LREAF +GE+ + R++ D +T +S+G F
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGF 85
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
GN TDT IFVG L+ E + + +R F FGEI ++ D T +SKG F
Sbjct: 12 GNNNTTDTKLTK-IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGF 67
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
IFVG +S + LREAF+ +GE+ + +I+ D +T +S+G F
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAF 79
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 411
++VG + S E L F + G+V KII RE G +AF+ FT +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFT-STEEASNAMQL 94
Query: 412 NKRVVLDKEMKVNWATSPGN 471
+ + + + ++VN+AT G+
Sbjct: 95 DGQDLHGRRIRVNYATERGS 114
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 232 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXX 402
P +YVGNL +VT+ L LF + G V K+ R PG + F+ F+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 403 XXMNKRVVLDKEMKVNWA 456
+N ++ ++++VN A
Sbjct: 236 VALNNSLLEGQKIRVNKA 253
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +1
Query: 490 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
S+ +FVG +S E + + LRE F +GE+S ++RD T + +G F I
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVI 53
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 375
+T+YV ++D VTE L LF G V C+I +P + +AF+EFT
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFT 197
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 615
++V D+ ++ L F FG++ +CRI DP ++
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSV 188
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N P DT+ +FVG L+ E ++ LR+ F +GEI ++ D T +SKG F
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGF 69
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1
Query: 490 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
S+ +F+G +S + + N+LRE F+ FGE+ ++R+ T + +G F
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGF 51
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 375
D+ +T+YV ++D VTE L +F G V C++ +P + +AF+EFT
Sbjct: 164 DDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFT 216
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 615
++V D+ ++ L F G++ +CR+ DP ++
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSV 207
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG LS + + L++AF FGE++ ++ D +T +S+G F
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGF 80
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 411
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 412 NKRVVLDKEMKVNWATSPGNQPKT 483
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG LS + + L++AF FGE++ ++ D +T +S+G F
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGF 80
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 411
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 412 NKRVVLDKEMKVNWATSPGNQPKT 483
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS ++ L++AF+ FGE++ RI D + +S+G F
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGF 86
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/119 (22%), Positives = 54/119 (45%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+ L+V N+D S+ + L LF Q GDV+ + N + + + ++
Sbjct: 211 RILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGK--NRGFIMVSYYDIRAAQKAARALH 268
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 591
R++ +++ + ++ P PK + S+ ++V +L I L F+ +GEI R
Sbjct: 269 GRLLRGRKLDIRYSI-PKENPK-ENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR 325
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS + LR+AFA FG++ + +++ D +T +S+G F
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 411
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 412 NKRVVLDKEMKVNWATSPGNQPK 480
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS + LR+AFA FG++ + +++ D +T +S+G F
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 411
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 412 NKRVVLDKEMKVNWATSPGNQPK 480
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 472 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+P+ + S + +FV LS + LR AFA FGE+++ ++V D + SKG F
Sbjct: 49 RPQAEPSTN--LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 490 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
S+ +IFV L + L+ AF +GEI+ C +V D T ++KG F +
Sbjct: 160 SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVL 210
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+YVGNLDP VTE L F G V+ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG--YAFLDF 45
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+YVGNLDP VTE L F G ++ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG--YAFLDF 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N P DT+ +FVG L+ E ++ LR F +G+I ++ D T +SKG F
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGF 69
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 448 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
N AT G T + IFVG L E + LR+ F FG I + I +DP+ +G
Sbjct: 223 NPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG 282
Query: 628 LCF 636
F
Sbjct: 283 FGF 285
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = +1
Query: 529 EIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
+I+++ L++ + FG++ +C +++D T +S+G
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRG 45
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 35.9 bits (79), Expect = 0.023
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXXXXXXXXM 411
LYVGNL ++T L +FG+ G V +I+ + D + F+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 412 NKRVVLDKEMKVNWATSPGN------QPKTDTSNH------HHIFVGDLSPEIETNILRE 555
N + + +KVN+ P + K +N H ++ G+L + + L++
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 556 AFAPFGEISNCRIVRDPQTLKSKGLCF 636
AF + +++ + T +S+G F
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGF 264
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +1
Query: 196 RLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFL 366
++R N P +Y GNL ++T L FG V G K+I R G + F+
Sbjct: 206 KIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFI 265
Query: 367 EFTCHXXXXXXXXXMNKRVVLDKEMKVNWAT 459
F MN V + +++N A+
Sbjct: 266 SFESAENVQSALATMNGVEVEGRALRLNLAS 296
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 493 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N +++VG + ++ L F+ +GEI + ++RD T KSKG F
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 496 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
H IFV L + + + L +AF +GEI +C+ V D + +SKG F +
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFIL 175
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 35.5 bits (78), Expect = 0.031
Identities = 25/119 (21%), Positives = 49/119 (41%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
+TL VGN+ +V + L LF Q GD++ + N + + + +
Sbjct: 217 RTLLVGNISSNVEDYELKVLFEQFGDIQALHTACK--NRGFIMVSYCDIRAAQNAARALQ 274
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 591
+++ ++ + ++ S N + DTS + V +L I L +GE+ R
Sbjct: 275 NKLLRGTKLDIRYSISKENPSQKDTSK-GALLVNNLDSSISNQELNRLVKSYGEVKEIR 332
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
S +P + + ++++G L P +E + L F+ FGEI ++++D T SKG F
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGF 525
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
S +P + + ++++G L P +E + L F+ FGEI ++++D T SKG F
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGF 525
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +1
Query: 229 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 405
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 406 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 586 CR 591
R
Sbjct: 282 IR 283
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 418 RVVLDKEMKVNWATSPG 468
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 35.1 bits (77), Expect = 0.041
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +1
Query: 229 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 405
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 406 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 585
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 586 CR 591
R
Sbjct: 282 IR 283
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 418 RVVLDKEMKVNWATSPG 468
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.1 bits (77), Expect = 0.041
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Frame = +1
Query: 214 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTC---H 381
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 382 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNI 546
NK+ + + + G + D + H +FVG L +
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124
Query: 547 LREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++ F+ +G I + +I+R SKG F
Sbjct: 125 VQSLFSEYGTIKDLQILRG-SLQTSKGCLF 153
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 448 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
N TS + +T+ ++F+ ++ E E L F PFG++ + ++ D T SK
Sbjct: 322 NNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISK- 380
Query: 628 LCFCII 645
CF I
Sbjct: 381 -CFGFI 385
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
IFVG L + +RE FG + +V+D +T SKG FC+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 406
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
IFVG L + +RE FG + +V+D +T SKG FC+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 406
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
IFVG L + +RE FG + +V+D +T SKG FC+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCV 406
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 463 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P K + +FVG LS + LRE + +G I N R+VR T S+G F
Sbjct: 52 PSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGF 109
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 478 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ T +FV LS L++AFA FG++ + R++ D + +SKG F
Sbjct: 27 RCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGF 79
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ FVG L+ + L AFA +G++ + +I+ D +T +S+G F
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGF 53
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 244 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 414
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 415 KRVVLDKEMKVNWATSPGN 471
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ FVG L+ + L AFA +G++ + +I+ D +T +S+G F
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGF 53
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 244 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 414
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 415 KRVVLDKEMKVNWATSPGN 471
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 493 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
N + FVG L+ + + F FGE+ + +I+ D +T +SKG F
Sbjct: 42 NEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRF 89
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.054
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 505 IFVGDLSPEIETNI-LREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
IFVG L P T + +RE FG + +V+D +T SKG FC+
Sbjct: 377 IFVGGL-PYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCV 422
Score = 31.9 bits (69), Expect = 0.38
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +1
Query: 232 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXX 402
P ++VG L TEV + L G ++G ++ RE GN YAF +
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Query: 403 XXMNKRVVLDKEMKVNWATSPGNQPKTD 486
+N + DK + V A QPK +
Sbjct: 434 AALNGIKMGDKTLTVRRAIQGAIQPKPE 461
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 34.7 bits (76), Expect = 0.054
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Frame = +1
Query: 214 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTC---H 381
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 382 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF 561
NK+ + + + G + + H +FVG L + ++ F
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLE----HKLFVGMLPKNVSETEVQSLF 120
Query: 562 APFGEISNCRIVRDPQTLKSKGLCF 636
+ +G I + +I+R SKG F
Sbjct: 121 SEYGTIKDLQILRG-SLQTSKGCLF 144
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 448 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
N TS + +T+ ++F+ ++ E E L F PFG++ + ++ D T SK
Sbjct: 313 NNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISK- 371
Query: 628 LCFCII 645
CF I
Sbjct: 372 -CFGFI 376
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 34.3 bits (75), Expect = 0.071
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFC 639
+P Q S+ +F+G +S + + L+E F +G++ I+RD T +++G F
Sbjct: 2 NPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Query: 640 I 642
+
Sbjct: 62 V 62
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 34.3 bits (75), Expect = 0.071
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGN-DPYAFLEFTCHXXXXXXXXX 408
KTL+ GNL + + F + G+V ++ + G+ Y +EF
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFAS-PEEAQKALE 442
Query: 409 MNKRVVLDKEMKVNWATSPG----NQP--KTDTSNHHHIFVGDLSPEI-ETNI---LREA 558
MN +++L ++++++ A G + P K + S I+V S + E I LR
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 559 FAPFGEISNCRIVRDPQTLKSKGLCF 636
F+ GE++ + D +T S+G +
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAY 528
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 490 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
S++ +F+G +S + L+E F+ FGE+ I++D T +++G F +
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVV 53
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 490 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
S++ +F+G +S + L+E F+ FGE+ I++D T +++G F +
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVV 53
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG L+ E+ +IL AF PFG+I + + D K + F
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGF 58
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
TLYVG L V E L F GD+K K + N + F
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGF 58
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+++G LSP + + L++AF+ F ++ R++ + T +S+G F
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGF 76
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 375
+T+YV ++D VTE L +LF G V C++ + + +AF+EFT
Sbjct: 137 RTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFT 184
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 33.9 bits (74), Expect = 0.094
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = +1
Query: 220 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII-----REPGNDPY-AFLEFT 375
D+ P+T LYV NL V E FL FG+ G + KI+ E + + F+ F
Sbjct: 180 DDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFM 239
Query: 376 CHXXXXXXXXXMNKRVVLDKEMKVNW 453
M +V + E+K+ W
Sbjct: 240 NRADGEAAKEKMQGIIVYEYELKIGW 265
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
N+ K + +FVG + + + L F F + I++D T S+G CF ++C
Sbjct: 8 NREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF-LLC 66
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 469 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
N+ K + +FVG + + + L F F + I++D T S+G CF ++C
Sbjct: 8 NREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCF-LLC 66
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +1
Query: 463 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
P N P + +FV L+ E + ++ F +G I +V D T K KG F
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 496 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
H IFV L E L F +GEI C +V D T K+KG F
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGF 149
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 496 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
H IFV L E L F +GEI C +V D T K+KG F
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGF 149
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 481 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFC 639
+ +S +FVG++ + LRE G + + R+V D +T K KG FC
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFC 55
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
+FVG L+ E LR F FG+I ++ D + +SKG F C
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFC 56
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCIIC 648
+FVG L+ E LR F FG+I ++ D + +SKG F C
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFC 56
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
+F+G +S E + LR+ F FGE+ I++D T +++G F +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVV 53
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
+F+G +S E + LR+ F FGE+ I++D T +++G F +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVV 53
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.12
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXX 408
+ L+V NL S++ + LFGQ G V +IIR+ N +AF+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 409 MNKRVVLDKEMKVNWA--------TSPGNQPK-TDTSNHHHIFVGDLSPEIETNILREAF 561
+ V + + V++A SP + P H ++V +L+ + + LRE F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 562 --APFGEISNCRIVRDPQTLKSKGLCF 636
A F +S + DP+ +S G F
Sbjct: 215 TAADFNPVSARVVFADPEG-RSSGYGF 240
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
G + + + V +LS + L E F PFG ++ C + D +T S+G F
Sbjct: 163 GGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGF 219
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 484 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
D + +FV +L L E F+ FG+IS +V D +T +S+G+ + +
Sbjct: 256 DVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYIL 308
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
+L + NL+P+V+ L +F G+VK ++ P F+EF MN
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEVK--QVRETPCKREQRFVEFFDVRDAAKALRVMNG 241
Query: 418 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 504
+V+ K M + ++ G K ++H H
Sbjct: 242 KVISGKPMVIQFSRPGGLTKKLFFASHFH 270
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 220 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 399
D+ KTLYVG L+ + E + F G+++ +I+ + AF+ +T
Sbjct: 223 DDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKA---CAFVTYTSREGAEKA 279
Query: 400 XXXMNKRVVLD-KEMKVNWATSPGNQ 474
++ R+V++ + +K+ W +Q
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQ 305
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
+F+G +S + + LR+ F+ +G++ I+RD T +++G F +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIV 53
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
+F+G +S + + LR+ F+ +G++ I+RD T +++G F +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIV 53
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCFCI 642
+F+G +S + + LR+ F+ +G++ I+RD T +++G F +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIV 53
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++V LS + L FA G++++C +V +P+T S+G F
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAF 117
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++V LS + L FA G++++C +V +P+T S+G F
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAF 116
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 502 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+IFV + L+ AF +GEI C +V D T + KG F
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGF 453
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
I V +L + L+ F+ FGEI+ ++++D +SKG F
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAF 85
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFL---CTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 411
+ V NL S +E FL + FG+I +VK K + YAF++FT M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 412 NKRVVLDKEMKVNWATSPGNQ 474
++R+ + + ++ A PG +
Sbjct: 102 DRRMYNGRMIYIDIA-KPGKR 121
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 31.9 bits (69), Expect = 0.38
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 381
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 382 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 558
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 559 FAPFGEISNCRIVRDPQTLKSKGLCF 636
F FG + + ++RD + +S+G F
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGF 255
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 31.9 bits (69), Expect = 0.38
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 381
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 382 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 558
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 559 FAPFGEISNCRIVRDPQTLKSKGLCF 636
F FG + + ++RD + +S+G F
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGF 255
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 445 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSK 624
V + S + ++T H + V L + + +LR F+ I + R+VRD T S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499
Query: 625 GLCF 636
G F
Sbjct: 500 GFAF 503
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+ LS LR AF FGE+ +I+ D + +SKG F
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG L+ E +++ F FGEI ++ D + +SKG F
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGF 58
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG L+ E +++ F FGEI ++ D + +SKG F
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGF 58
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG L+ E +++ F FGEI ++ D + +SKG F
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGF 58
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
+FV S + L++ F+ FG+++N +I+ + +T +S G
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLG 100
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
+FV S + L++ F+ FG+++N +I+ + +T +S G
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLG 119
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 417
TL V NL PSV+ L +FG G++K +I P + F+EF +N+
Sbjct: 223 TLVVFNLAPSVSNRDLENIFGVYGEIK--EIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 418 RVVLDKEMKVNWATSPG 468
+ K +K+ + G
Sbjct: 281 TEIAGKRIKLEHSRPGG 297
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 478 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ D + IFVG LS ++ L F +G+I+ C+I+ T + +G F
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGF 57
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 411
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 412 NKRVVLDKEMKVNWA 456
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 478 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ D + IFVG LS ++ L F +G+I+ C+I+ T + +G F
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGF 57
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 411
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 412 NKRVVLDKEMKVNWA 456
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 508 FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
F LS + N LRE F+ GEI N + D T SKG+ +
Sbjct: 408 FDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAY 450
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.1 bits (67), Expect = 0.66
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 211 NMGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 375
N G S P+ +LY+ NLD V+E L +F G V + ++ + +AF+EF
Sbjct: 6 NHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65
Query: 376 CHXXXXXXXXXMNKRVVLDK 435
M+ R++ K
Sbjct: 66 SADSAGRAMLHMDGRLIGQK 85
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 481 TDTSNHH----HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ T+NH IFVG+L+ + LR F FG++ + +V + +SKG F
Sbjct: 2 SQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGF 57
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 425
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 196 RLR*ANMGDESHPKTLYVG-NLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY 357
+LR +N + HP+ + N +P E + LFG I +K I + + PY
Sbjct: 10 QLRESNNNQKVHPQPMEESINQNPEAMEALISNLFGNISSLKSAYIELQSAHTPY 64
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXXXXXXXXXM 411
L+V L+P + L T+F + G V +IR+ G+ YAF+EF M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 412 NKRVVLDKEMKVNWATS 462
+ ++ D+ + V+++ S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 460 SPGNQPKTDTSNHHHI-FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
S G+ P+ + ++ FV L+P E L F+ FG + + ++RD +T LC+
Sbjct: 229 SIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKT--GDSLCY 286
Query: 637 CII 645
I
Sbjct: 287 AFI 289
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G F
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGF 51
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G F
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGF 51
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 244 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 414
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 415 KRVVLDKEMKVNWATSPGN 471
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G F
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGF 51
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 244 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 414
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 415 KRVVLDKEMKVNWATSPGN 471
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G F
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGF 51
Score = 27.5 bits (58), Expect = 8.1
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 244 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 414
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 415 KRVVLDKEMKVNWATSPGN 471
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
L+VG+L P TE L LFG+ GD+ + G +AF+ +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRG---FAFIYY 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G L ++ LR+ GEI R+++D + SKG F
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAF 161
Score = 28.7 bits (61), Expect = 3.5
Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Frame = +1
Query: 229 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXX 399
H +++G L V E L L +IG++ +++ R+ G+ YAF+ F
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE- 576
++ + K ++ + ++T N +F+G++ + R+ G
Sbjct: 174 IEELHSKEFKGKTIRCS---------LSETKN--RLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 577 ISNCRIVRDP-QTLKSKGLCFCI 642
+ N +++DP T +++G F +
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVL 245
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Frame = +1
Query: 229 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXX 399
H +Y+G + TE L G IG+V +I+RE + YAF+ F
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 400 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPE-IETNILREAFAPFGE 576
+N K +K + T H +F+G++ +E++I + A
Sbjct: 150 IDTLNNTDFRGKRIKC-----------STTQAKHRLFLGNVPRNWMESDIKKAANRIGPG 198
Query: 577 ISNCRIVRDPQTL-KSKGLCF 636
+ + ++PQ + +++G F
Sbjct: 199 VQIVELPKEPQNMGRNRGFAF 219
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 414
K L V NL PS+T L LF G V C I + A++E++ + +N
Sbjct: 351 KFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSI---TDSKHIAYIEYS-NSEEATAALALN 406
Query: 415 KRVVLDKEMKVNWATSPGNQPKTDTSN 495
V + + V A S ++P ++ S+
Sbjct: 407 NTEVFGRALNVEIAKSLPHKPSSNNSS 433
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/63 (19%), Positives = 33/63 (52%)
Frame = +1
Query: 454 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLC 633
+++PG + ++V +L + + + F+ FG+++ +++D T +S+G+
Sbjct: 42 SSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVA 101
Query: 634 FCI 642
F +
Sbjct: 102 FVL 104
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 339
TLYV NLD S+T + TLF G V ++++
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKD 91
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ ++VG+LS ++ L F+ G++ R++ D + +SKG F
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGF 249
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 217 GDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEF 372
G+E P T+ V L S+T L F ++G V+ C ++ G+D +AF++F
Sbjct: 11 GEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
>At1g05400.1 68414.m00548 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 161
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 282 PMYVVWSNRRCKRLQDYTGARK*PVCISRVYVSHG 386
P+YV W +RC DY R P CI R+ G
Sbjct: 13 PVYVYWDMKRCPVPDDYDARRVGP-CIKRILRKSG 46
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG L+ + + + F +G+I I+ D T +SKG F
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
G+ + + + + ++VG+LS ++ L F G++ R++ D + +SKG F
Sbjct: 238 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGF 294
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG+LS +++ L + F G + ++ D T +S+G F
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +1
Query: 466 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
G+ + + + + ++VG+LS ++ L F G++ R++ D + +SKG F
Sbjct: 246 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGF 302
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+FVG+LS +++ L + F G + ++ D T +S+G F
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRI 594
+FVG+L +++ ++ + F+ FGE+ + RI
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRI 202
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
++VG+L + LR+ F FG + ++ DP+T + KG F
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGF 310
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 235 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
+T+YVGNL + + + LF + G + + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEF 52
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 208 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 315
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 208 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 315
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+F+G LS L EAF+ G++ +IV D + +SKG F
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGF 79
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 384 GGGHSAGRH-EQASGPRQGNEG*LGDESW 467
GGGHS+GR + G R G G G++ W
Sbjct: 14 GGGHSSGRRGGRGGGGRGGGGGGRGEQRW 42
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 505 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 627
++V ++ + L + F PFG + + + R+PQT +S+G
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRG 150
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXXXXXM 411
++YVG L +TE + +F G V KI+ R Y F+ F+ M
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 412 NKRVVLDKEMKVNWATSPGNQ 474
+ + + + ++VN T+ G +
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGR 88
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 499 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGLCF 636
+ F+G L+ LR+AF +G + ++V D + +S+G F
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGF 52
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 211 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 372
N+ D TL++GNL ++ E L +L K KI+R+ F+EF
Sbjct: 225 NIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQE-RHTVCFIEF 277
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 508 FVGDLSPEIETNILREAFAPFGEI--SNCR 591
+VG+L + E N L+ AF+ FG++ SN R
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVR 40
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 241 LYVGNLDPSVTEVFLCTLFGQIGDVK 318
LY+ NLD V+ + LF ++GD+K
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLK 135
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -1
Query: 396 CGRRRVTRKLEKCIRVISWLP---YNLATFYIAYLT 298
C + LEKC++VI WL + TF + +LT
Sbjct: 514 CDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLT 549
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 238 TLYVGNLDPSVTEVFLCTLFGQIGDVK 318
T+Y+ NLD VT + L+ +IG++K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELK 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,043
Number of Sequences: 28952
Number of extensions: 274105
Number of successful extensions: 998
Number of sequences better than 10.0: 170
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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