Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A08
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   0.77 
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   2.3  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   3.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   7.2  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   7.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.2  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 280 TASGMSFLKSPETASQGDVXKKHPIKAFRESI 185
           ++ G+ FL SPE A+Q  + +KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 171 LQYPDRHFPSCMSLYSRQQRTVQNTARRNPSSLNYS 64
           L  PDRH PS  S  + +  T    + RN  SL YS
Sbjct: 162 LPAPDRHTPSSASSRASETGTTSPQSMRNQISLLYS 197


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 240 AVSGDFKKDIPEAVAXACGKCTPXQKHLFKRFLEVVXDKLPQEYEAFKTKYDP 398
           A S  FK DI E +  +         HL+ R  E +  KLP+E E F  K++P
Sbjct: 106 AYSVVFKDDISEEMLKSA------LNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 111 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 221
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  MKGFYVLCFALFAAVYCKETYS 143
           + G ++LC  L A V CKE +S
Sbjct: 581 LSGHFLLCAKLGAKVRCKELFS 602


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLXTSPCDAVSGDFKKDIPEAVAX 287
           F   + +  Y ++ND       + +ID S+K+F  C    +   +  GD  +D   A   
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 288 ACGKCTPXQKHLFKRFLEVV 347
              +      HL ++F +V+
Sbjct: 86  VQNEYHQKSNHLREKFAQVL 105


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 46   LPNQLETIIQR*RVSTCCVLH 108
            LP++LE +I   + S CC+ H
Sbjct: 1903 LPHRLENLIDSMQESVCCMCH 1923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,842
Number of Sequences: 5004
Number of extensions: 39796
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)