Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A08
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)             31   0.79 
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            29   3.2  
SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.6  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   27   9.7  

>SB_44898| Best HMM Match : Cation_efflux (HMM E-Value=1.1)
          Length = 641

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 369 YEAFKTKYDPQXKHFDALLSAVANS*GNQFLIFPAV---LNLLADMNNLY 509
           +    T  DP   HFDA+ + +    G+  L F AV   LN L D + LY
Sbjct: 332 FTGLNTLLDPSMLHFDAVFTGLNTLLGSSMLYFGAVFTGLNTLLDPSMLY 381


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 274 SGMSFLKSP---ETASQGDVXKKHPIKAFRESIFPTKASISRSSFSELYVSL 128
           +G+ ++KS     T +Q D+  K+P +  R  ++PT++    S    + VSL
Sbjct: 346 AGLVYMKSGFMNRTVTQADLYNKYPDRPVRLKVYPTQSPAISSDVGGVNVSL 397


>SB_52217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 351 DKLPQEYEAFKTKYDPQXKHFDALLSAVA 437
           ++L ++    K ++ P+ +HFDAL S +A
Sbjct: 11  ERLNEDLRKAKEEFTPEMRHFDALQSKIA 39


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 351  DKLPQEYEAFKTKYDPQXKHFDALLSAVA 437
            ++L ++    K ++ P+ +HFDAL S +A
Sbjct: 1042 ERLNEDLRKAKEEFTPEMRHFDALQSKIA 1070


>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
 Frame = +3

Query: 126  CKETYSSENDDLDIEALVGNIDSLKAFIGCFLXTSPCDAVSGDFKK------------DI 269
            C+ T++    ++ I  LV  ++ L + + C L +SP   V   F+K            DI
Sbjct: 1110 CRLTHNDLPQNIVINDLVNRLEQLASLLLCALLSSPYKQVEQHFEKCKHRVRTATTTTDI 1169

Query: 270  PEAVAXACGKCT 305
            P A A   G C+
Sbjct: 1170 PAASATFVGTCS 1181


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 186 YFPPKLQYPDRHFPSCMSLYSRQQRTVQNTARRNPSSLNYS 64
           YFP   +Y D  F S  +L        +N ++ + S+LNYS
Sbjct: 746 YFPFLCRYCDFSFESSKALKKHHHEKHRNNSKIDSSNLNYS 786


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -2

Query: 259 LKSPETASQGDVXKKHPIKAFRESIFPTKASISRSSFSELYVSLQ*TAANSAKHST 92
           LKSP T       K     A R  I P+K S   SSF  +       A   ++H+T
Sbjct: 588 LKSPNTMKPRRTYKDLKAHATRTQILPSKPSTFASSFHPVASRFVEIAPRPSRHAT 643


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 249 GDFKKDIPEAVAXACGKCTPXQKHLFKRFLEVVXDKLPQEYEAFKT 386
           G F + +   +A ACGKC   ++ + +     +    P +Y+  K+
Sbjct: 546 GSFPRFLNTFIAHACGKCHNHRETVIEYITSNIQSHQPSQYDVRKS 591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,085
Number of Sequences: 59808
Number of extensions: 286112
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)