Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A08
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    29   1.5  
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta...    28   3.4  
At5g03900.2 68418.m00368 expressed protein predicted protein, Sy...    28   4.5  
At5g03900.1 68418.m00367 expressed protein predicted protein, Sy...    28   4.5  
At2g15390.2 68415.m01761 xyloglucan fucosyltransferase, putative...    27   6.0  
At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative...    27   6.0  

>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 246 SGDFKKDIPEAVAXACGKCTPXQKHLFKRFLEVVXDKLP 362
           SG  K +   A A   G  T  Q H  K  LE + DKLP
Sbjct: 139 SGKHKDEQTPATATTTGPATTDQPHEKKGILEKIKDKLP 177


>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam domains PF00226:
           DnaJ domain and PF00096: Zinc finger, C2H2 type
          Length = 630

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 66  YNSTMKGFYVLCFALFAAVYCKE-----TYSSENDDLDIEALVGNIDSLKAFIGCF 218
           Y+ T KGFY + + +F +VY  E     T     D +    ++GN++S  A +  F
Sbjct: 116 YSDTGKGFYKVYYDVFNSVYLNEIKFARTLGLRMDSVREAPIMGNLESPYAQVTAF 171


>At5g03900.2 68418.m00368 expressed protein predicted protein,
           Synechocystis sp., PIR:S74969
          Length = 523

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 97  ST*KPFIVEL*SPIDSEDYSILCTRRALKPR 5
           S+ KPF++ L SP+D   +  + T R L  R
Sbjct: 20  SSKKPFLIRLRSPVDRYSFPRMLTERCLSTR 50


>At5g03900.1 68418.m00367 expressed protein predicted protein,
           Synechocystis sp., PIR:S74969
          Length = 429

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 97  ST*KPFIVEL*SPIDSEDYSILCTRRALKPR 5
           S+ KPF++ L SP+D   +  + T R L  R
Sbjct: 20  SSKKPFLIRLRSPVDRYSFPRMLTERCLSTR 50


>At2g15390.2 68415.m01761 xyloglucan fucosyltransferase, putative
           (FUT4) identical to SP|Q9SJP2 Probable
           fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 500

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 GLYWMLLXNIPLRRCFRGFQKGHS*SCGXSMWQMYSXPETS 322
           G  W+L  + PL +   G+ KG+S  C  +M + +S   TS
Sbjct: 159 GTSWLLPLDFPLMKYADGYHKGYS-RCYGTMLENHSINSTS 198


>At2g15390.1 68415.m01760 xyloglucan fucosyltransferase, putative
           (FUT4) identical to SP|Q9SJP2 Probable
           fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) {Arabidopsis
           thaliana}; similar to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 503

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 GLYWMLLXNIPLRRCFRGFQKGHS*SCGXSMWQMYSXPETS 322
           G  W+L  + PL +   G+ KG+S  C  +M + +S   TS
Sbjct: 162 GTSWLLPLDFPLMKYADGYHKGYS-RCYGTMLENHSINSTS 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,746,271
Number of Sequences: 28952
Number of extensions: 202077
Number of successful extensions: 480
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)