Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_A06
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    44   7e-06
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    36   0.002
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    32   0.022
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   3.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   3.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   4.4  
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    25   4.4  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   5.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   7.8  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    24   7.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    24   7.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   7.8  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 44.0 bits (99), Expect = 7e-06
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +1

Query: 91  VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLQKIYEVPVVDVRTKINXGKL 267
           V+ PN    L R    Q P    F   + + K+D+++YLQ +Y + VV V+++I  GKL
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKL 67


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 148 NIVHFHCSMEMTKYDIKNYLQKIYEVPVVDVRTKINXGKLKKMLSRL 288
           N + FH  ++  K+ IKN ++K+Y V  V + T I     KK   +L
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKL 125


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 32.3 bits (70), Expect = 0.022
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 148 NIVHFHCSMEMTKYDIKNYLQKIYEVPVVDVRTKINXGKLKKMLSRL 288
           N + FH  ++  K+ IK  ++K+Y V  V + T I     KK   +L
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKL 125


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 124 RPHPKQLPNIVHFHCSMEMTKYDIKNYLQKIYEVPV 231
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 100 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLQKIYEV 225
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y +
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRL 646


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 173 WK*LNMTLKIIYKKFMKYPLW 235
           WK L++ L++I    + YPLW
Sbjct: 285 WKRLDLRLQLIQCLAISYPLW 305


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/55 (20%), Positives = 26/55 (47%)
 Frame = -1

Query: 174 HRTMKMHDVRQLFWMWSY*FHPKIRQKYXKLWVSSLINGVPAVWTLLKLLVLSRG 10
           H+++++    +  + +       I Q   + W  S+   V  VW   ++L+++RG
Sbjct: 151 HKSIQVASSPETMYKFIIYLSKAILQPSRRPWKESITTAVRWVWHAFRILLITRG 205


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 108 KIRQKYXKLWVSSLINGVPA---VWTLLKLLVLSR 13
           K  Q   K W++ +++G P+    WTL   LV  +
Sbjct: 57  KYYQPGYKFWIAKILDGAPSYVLTWTLFYSLVYGK 91


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +1

Query: 43  PHGWYPIY--QRGNPQLXVFLPNFWMKL--VRPHPKQLPNIVHFHCSMEMTKY 189
           P  WYP+       P   +  P     L  ++ HP +LP+ +H H     T Y
Sbjct: 162 PSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPYSSPTSY 214


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 49  GWYPIYQRGNPQLXVFLPNFWMKLVRPHPKQLPN 150
           GW    +  N +L +FLP+    + +P     PN
Sbjct: 314 GWVSADKMINQRLSIFLPSALNNISKPESTDRPN 347


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 310 DIXFFNNITLTTSFLISXYLFWSSHP 233
           ++ F N   LT   LI  YLF SS P
Sbjct: 363 NVAFINMFFLTIYILIDAYLFPSSVP 388


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 307 IXFFNNITLTTSFLISXYLFWSSHPQRVLHKFF 209
           + + +  +LT  FLI   LF ++H Q  L K+F
Sbjct: 28  LFYLSLFSLTNLFLIQK-LFHANHTQHPLKKYF 59


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 48  RLVPHLSKRKPTTXSIFAEFLDEI 119
           RL+P ++K  P+     A+FL E+
Sbjct: 404 RLIPSVTKSLPSAMEFDADFLHEV 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,824
Number of Sequences: 5004
Number of extensions: 25579
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)